Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 3.0e-22 107.5 48 100.0
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 3.9e-22 107.1 47 100.0
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 3.9e-22 107.1 47 100.0
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 3.9e-22 107.1 47 100.0
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 4.8e-20 100.1 44 100.0
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.4e-19 97.8 47 93.6
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.4e-19 97.8 44 97.7
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 6.9e-19 96.3 44 93.2
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 9.0e-19 95.9 44 95.5
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 95.5
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 95.5
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.5e-18 95.1 44 95.5
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.5e-18 95.1 44 93.2
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.5e-18 95.1 47 87.2
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.5e-18 95.1 47 87.2
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.5e-18 95.1 47 87.2
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.0e-18 94.7 42 97.6
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.6e-18 94.4 44 90.9
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.6e-18 94.4 44 90.9
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 3.4e-18 94.0 44 90.9
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.4e-18 94.0 44 90.9
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 4.5e-18 93.6 44 90.9
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.5e-18 93.6 44 90.9
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 4.5e-18 93.6 44 90.9
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 5.8e-18 93.2 47 83.0
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 7.6e-18 92.8 44 90.9
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 7.6e-18 92.8 44 90.9
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 9.9e-18 92.4 44 88.6
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 9.9e-18 92.4 44 88.6
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 9.9e-18 92.4 44 88.6
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 9.9e-18 92.4 44 88.6
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 9.9e-18 92.4 44 90.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 90.9
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 1.3e-17 92.0 41 97.6
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 90.9
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 90.9
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.3e-17 92.0 44 88.6
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.7e-17 91.7 44 88.6
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.7e-17 91.7 44 88.6
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.7e-17 91.7 44 88.6
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.9e-17 90.9 44 93.2
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 2.9e-17 90.9 44 86.4
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 2.9e-17 90.9 44 86.4
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.9e-17 90.9 44 88.6
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 4.9e-17 90.1 40 97.5
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 4.9e-17 90.1 44 88.6
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.4e-17 89.7 46 82.6
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.4e-17 89.7 46 82.6
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 6.4e-17 89.7 45 88.9
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 6.4e-17 89.7 45 88.9
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 6.4e-17 89.7 45 88.9
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 6.4e-17 89.7 45 88.9
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 6.4e-17 89.7 45 88.9
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.1e-16 89.0 44 84.1
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.1e-16 89.0 42 90.5
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.4e-16 88.6 44 86.4
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 2.4e-16 87.8 44 84.1
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 2.4e-16 87.8 44 86.4
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.2e-16 87.4 44 84.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.5e-16 86.7 47 76.6
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 5.5e-16 86.7 44 84.1
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 5.5e-16 86.7 45 84.4
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 5.5e-16 86.7 45 84.4
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 5.5e-16 86.7 40 90.0
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 7.1e-16 86.3 40 90.0
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 7.1e-16 86.3 44 84.1
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 7.1e-16 86.3 44 84.1
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.3e-16 85.9 44 84.1
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.2e-15 85.5 40 90.0
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.2e-15 85.5 40 90.0
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-15 85.1 46 78.3
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.6e-15 85.1 44 81.8
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.1e-15 84.7 44 84.1
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 2.7e-15 84.3 44 79.5
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 7.9e-15 82.8 44 81.8
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 7.9e-15 82.8 44 81.8
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 7.9e-15 82.8 44 81.8
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.0e-14 82.4 39 87.2
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 2.3e-14 81.3 39 87.2
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.0e-14 80.9 66 60.6
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.9e-14 80.5 44 72.7
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.9e-14 80.5 44 72.7
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 5.1e-14 80.1 43 79.1
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-13 79.0 44 77.3
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.5e-13 78.6 44 70.5
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 2.5e-13 77.8 46 78.3
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.5e-13 77.8 46 78.3
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.5e-13 77.8 46 78.3
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 3.3e-13 77.4 40 85.0
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 5.6e-13 76.6 42 76.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.4e-13 76.3 40 80.0
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 7.4e-13 76.3 43 81.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 9.6e-13 75.9 40 82.5
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 9.6e-13 75.9 40 82.5
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-12 73.9 32 96.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.1e-11 72.4 41 78.0
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.1e-11 72.4 76 52.6
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-11 71.2 33 93.9
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 2.4e-11 71.2 33 93.9
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 4.0e-11 70.5 35 80.0
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 5.3e-11 70.1 48 62.5
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 9.0e-11 69.3 44 65.9
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.2e-10 68.9 33 90.9
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 2.6e-10 67.8 37 73.0
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.4e-10 67.4 34 85.3
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.0e-09 65.9 42 66.7
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.3e-09 65.5 35 80.0
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 2.2e-09 64.7 46 60.9
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.9e-08 61.6 31 80.6
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 2.7e-07 57.8 75 44.0
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 3.5e-07 57.4 50 52.0
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 2.3e-06 54.7 42 52.4
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.3e-06 54.7 42 52.4
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.3e-06 54.7 42 52.4
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.3e-06 54.7 42 52.4
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 3.0e-06 54.3 37 59.5
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 3.9e-06 53.9 42 52.4


User provided reference genes

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