Gene: AT1G53690

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G53690
  • Transcript Identifier AT1G53690.1
  • Gene Type Coding gene
  • Location Chr1 : 20042699-20043344 : negative

Gene Family Information

  • ID HOM05D004494
  • #Genes/#Species 160/75
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G53690.1
  • uniprot Q9C8M4

Descriptions

  • Description DNA directed RNA polymerase, 7 kDa subunit
  • Computational description DNA directed RNA polymerase, 7 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sperm cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNA polymerase Rbp10 (InterPro:IPR006591); BEST Arabidopsis thaliana protein match is: DNA directed RNA polymerase, 7 kDa subunit (TAIR:AT5G41010.1); Has 279 Blast hits to 279 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 54; Plants - 68; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0009860
IEP
Gene Ontologypollen tube growth1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005736
IBA
Gene OntologyRNA polymerase I complex2
GO:0005665
IBA
Gene OntologyRNA polymerase II, core complex2
GO:0005666
IBA
Gene OntologyRNA polymerase III complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039747 DNA-directed RNA polymerases I, II, and III subunit RPABC4
IPR006591 RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 RNA polymerase subunit RPABC4/transcription elongation factor Spt4
Mapman id Description
15.1.6.10 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 12