Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 2.3e-47 191.8 92 100.0
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 2.3e-47 191.8 92 100.0
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 3.1e-36 154.8 78 93.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 3.1e-36 154.8 78 93.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 3.1e-36 154.8 78 93.6
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 2.0e-35 152.1 88 85.2
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.6e-35 151.8 88 85.2
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 5.9e-35 150.6 88 84.1
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 5.9e-35 150.6 88 84.1
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.0e-34 149.8 88 84.1
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.3e-34 149.4 88 83.0
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.7e-34 149.1 88 83.0
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 2.5e-33 145.2 88 80.7
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.2e-33 144.8 88 80.7
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.2e-33 143.7 88 79.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.6e-32 142.5 88 77.3
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.6e-32 142.5 88 77.3
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.6e-32 142.5 88 77.3
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 2.1e-32 142.1 88 78.4
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.1e-32 142.1 88 78.4
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 2.1e-32 142.1 88 78.4
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.7e-32 141.7 88 77.3
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.7e-32 141.7 88 76.1
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 78.4
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 78.4
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 78.4
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 76.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 78.4
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 3.6e-32 141.4 88 76.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 77.3
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 77.3
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 76.1
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 77.3
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 77.3
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 4.7e-32 141.0 88 78.4
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 6.1e-32 140.6 88 76.1
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 6.1e-32 140.6 88 76.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 8.0e-32 140.2 88 77.3
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 8.0e-32 140.2 88 76.1
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 8.0e-32 140.2 88 77.3
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 8.0e-32 140.2 88 77.3
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 8.0e-32 140.2 88 76.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.0e-31 139.8 88 75.0
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.0e-31 139.8 88 77.3
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.4e-31 139.4 88 77.3
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.4e-31 139.4 88 77.3
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.4e-31 139.4 88 76.1
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.8e-31 139.0 88 75.0
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.8e-31 139.0 88 76.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.8e-31 139.0 88 76.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.8e-31 139.0 88 76.1
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.8e-31 139.0 88 76.1
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.3e-31 138.7 88 75.0
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 2.3e-31 138.7 88 76.1
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 2.3e-31 138.7 88 75.0
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 4.0e-31 137.9 88 76.1
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 4.0e-31 137.9 88 75.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.0e-31 137.9 88 73.9
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 4.0e-31 137.9 88 73.9
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 5.2e-31 137.5 88 76.1
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 5.2e-31 137.5 88 76.1
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 5.2e-31 137.5 88 76.1
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.2e-31 137.5 105 65.7
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 5.2e-31 137.5 105 65.7
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 5.2e-31 137.5 88 75.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 6.7e-31 137.1 88 75.0
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 8.8e-31 136.7 88 75.0
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 8.8e-31 136.7 88 75.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 73.9
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 73.9
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 75.0
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 72.7
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 72.7
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 73.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 72.7
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.2e-30 136.3 91 72.5
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.2e-30 136.3 88 73.9
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.5e-30 136.0 88 72.7
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.5e-30 136.0 88 79.5
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 2.0e-30 135.6 88 75.0
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.6e-30 135.2 88 73.9
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 3.3e-30 134.8 88 72.7
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.4e-30 134.4 88 73.9
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 4.4e-30 134.4 88 72.7
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 72.7
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 72.7
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 72.7
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 73.9
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 73.9
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 5.7e-30 134.0 88 73.9
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 9.7e-30 133.3 88 75.0
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 9.7e-30 133.3 105 61.9
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.3e-29 132.9 88 71.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.7e-29 132.5 88 71.6
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.2e-29 132.1 88 71.6
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 2.8e-29 131.7 88 69.3
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 3.7e-29 131.3 82 76.8
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.7e-29 131.3 88 70.5
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 4.8e-29 131.0 88 72.7
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.4e-28 129.4 75 76.0
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 1.4e-28 129.4 82 74.4
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.8e-28 129.0 88 69.3
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 2.4e-28 128.6 101 64.4
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.1e-28 127.9 88 68.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.2e-27 126.3 74 78.4
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.6e-27 125.9 85 71.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.0e-27 125.6 87 69.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 7.7e-27 123.6 87 69.0
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 5.0e-26 120.9 71 77.5
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 7.2e-25 117.1 88 60.2
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 8.0e-24 113.6 88 64.8
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 8.0e-24 113.6 88 63.6
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 2.6e-22 108.6 72 70.8
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.4e-22 108.2 66 74.2
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 9.1e-20 100.1 67 71.6
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.9e-19 97.4 87 55.2
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 8.5e-18 93.6 64 71.9
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 7.2e-17 90.5 72 56.9
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 6.1e-16 87.4 88 50.0
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 3.0e-15 85.1 86 50.0
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.6e-14 82.0 59 67.8
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 5.7e-06 54.3 55 50.9


User provided reference genes

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