Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.5e-107 392.1 194 100.0
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.5e-107 392.1 194 100.0
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.5e-107 392.1 194 100.0
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 7.1e-107 390.6 194 99.5
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 3.5e-106 388.3 194 99.0
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 1.0e-105 386.7 194 98.5
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.5e-104 382.1 194 97.4
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 3.3e-104 381.7 194 96.9
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.1e-103 379.0 194 96.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 2.8e-103 378.6 194 96.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.7e-103 378.3 194 96.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.1e-102 376.7 194 95.9
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 4.2e-99 364.8 194 91.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 91.8
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 85.1
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.2e-91 338.2 194 84.5
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 5.5e-91 337.8 177 92.7
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 84.0
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 81.4
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 3.6e-90 335.1 194 83.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 83.5
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 81.4
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 82.0
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 80.4
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 82.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 83.0
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 79.4
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 8.8e-89 330.5 193 81.3
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 80.9
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 82.5
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 81.4
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 81.4
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.9
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.9
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 79.9
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 80.9
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 80.4
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 79.9
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 79.9
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.4
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 80.9
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 80.4
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 78.4
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 80.4
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 2.2e-87 325.9 194 77.3
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 2.2e-87 325.9 194 79.9
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 2.8e-87 325.5 194 79.4
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 78.9
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 78.9
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 81.4
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 77.8
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 79.4
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 80.9
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 79.4
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 78.9
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 78.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 78.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 77.3
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 80.4
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 79.4
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 78.9
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 79.4
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 77.3
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 3.1e-86 322.0 195 79.5
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 9.1e-86 320.5 194 77.8
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.2e-85 320.1 214 73.8
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.2e-85 320.1 194 77.3
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.6e-85 318.9 214 73.8
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.7e-85 317.4 194 78.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 5.0e-84 314.7 187 78.6
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 6.5e-84 314.3 200 75.0
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 75.3
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 8.5e-84 313.9 194 77.3
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 1.4e-83 313.2 214 72.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.4e-83 313.2 194 76.8
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.4e-83 313.2 194 74.7
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 74.7
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.2e-83 312.0 194 77.3
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.2e-82 310.1 194 76.8
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.6e-82 308.5 235 67.2
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 7.9e-82 307.4 194 74.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 7.9e-82 307.4 191 76.4
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.4e-81 306.6 194 73.7
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.0e-80 302.8 225 68.0
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 2.0e-80 302.8 210 70.5
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 7.4e-80 300.8 188 75.0
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.2e-79 299.3 187 74.3
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 2.8e-79 298.9 194 75.8
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 1.1e-78 297.0 194 71.1
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 1.4e-78 296.6 210 71.0
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.1e-78 295.4 194 70.6
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 4.1e-78 295.0 178 77.0
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.5e-77 291.6 173 79.2
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 5.9e-77 291.2 194 67.5
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 7.7e-77 290.8 194 71.6
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 6.5e-76 287.7 195 68.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 9.4e-75 283.9 297 52.9
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.6e-74 282.0 161 83.9
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.0e-73 280.4 162 83.3
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 2.2e-71 272.7 274 54.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 8.2e-71 270.8 160 79.4
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 3.5e-69 265.4 172 71.5
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 5.2e-65 251.5 283 50.2
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 3.7e-55 218.8 114 95.6
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.0e-54 214.5 120 84.2
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 4.5e-53 211.8 178 55.6
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.9e-53 211.5 120 83.3
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.9e-53 211.5 120 82.5
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.7e-52 209.9 130 76.9
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.1e-51 207.2 134 72.4
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 4.7e-50 201.8 193 50.8
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 1.3e-47 193.7 123 74.8
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.6e-45 186.8 123 72.4
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.1e-42 176.4 173 50.9
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.0e-41 174.1 114 75.4
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.4e-41 173.7 122 68.0
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 7.5e-40 167.9 99 82.8
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 4.1e-38 162.2 112 63.4
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-37 160.6 93 82.8
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.6e-35 151.8 198 40.4
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 2.8e-34 149.4 88 85.2
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 2.8e-34 149.4 88 85.2
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.8e-33 146.7 89 78.7
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.2e-32 144.1 73 93.2
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 3.7e-31 139.0 76 81.6
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.1e-29 133.3 71 84.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-25 120.9 64 84.4
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.9e-19 100.1 74 67.6
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.0e-17 92.4 59 74.6
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-13 80.1 83 51.8
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.1e-13 80.1 83 51.8
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.7e-13 79.7 55 72.7
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.0e-13 78.6 91 52.7
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 2.8e-10 69.7 71 54.9
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.1e-09 67.8 91 40.7
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 2.0e-08 63.5 56 55.4


User provided reference genes

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