Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-231 806.2 414 100.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-231 804.7 414 99.8
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.4e-231 804.7 414 99.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 5.8e-231 803.9 414 99.3
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 8.3e-230 800.0 414 99.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.6e-226 787.3 426 95.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 9.5e-226 786.6 414 96.6
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.2e-225 786.2 414 96.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 2.8e-225 785.0 426 95.3
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 2.8e-225 785.0 426 95.3
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-225 783.5 414 96.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.1e-224 781.6 414 96.4
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 8.9e-224 780.0 414 95.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.4e-221 771.9 414 94.4
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.2e-215 753.1 414 93.2
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.0e-211 740.0 414 89.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.9e-211 738.0 414 90.1
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-211 737.6 416 92.3
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 8.1e-201 703.7 414 85.7
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.0e-199 699.1 414 85.0
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.2e-198 695.7 414 85.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.4e-197 692.2 409 85.1
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.1e-196 689.1 414 83.3
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-196 688.7 414 82.6
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 82.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-193 679.5 418 85.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.6e-193 679.5 416 82.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 81.4
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 82.9
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 82.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 82.4
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.8e-193 677.9 414 81.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.8e-193 677.9 410 82.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 80.9
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 81.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 80.9
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 81.6
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.0e-192 674.9 414 81.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 81.4
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.5e-191 672.9 413 81.6
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.4e-191 671.8 411 82.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 81.4
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.2e-190 669.1 414 80.4
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 5.5e-189 664.5 413 81.1
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.2e-188 663.3 413 80.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.7
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 80.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.0e-187 660.2 413 80.4
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 80.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 80.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.0e-187 658.7 409 79.7
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 3.9e-187 658.3 414 80.0
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.1e-186 656.8 414 79.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.5e-186 656.4 409 81.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.9e-186 656.0 413 79.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.5e-186 655.6 445 75.7
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.3e-186 655.2 414 79.2
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 3.3e-186 655.2 411 80.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.3e-186 654.8 411 79.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 7.4e-186 654.1 411 80.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.3e-185 653.3 411 79.6
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.1e-185 652.5 413 79.2
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.3e-185 651.0 414 78.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.3e-185 651.0 415 79.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 78.5
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 6.9e-184 647.5 413 79.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.2e-183 646.7 413 78.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 78.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.6e-183 645.6 414 78.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.7e-182 642.9 413 78.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.9e-182 642.1 413 77.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 6.5e-182 641.0 410 78.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 79.7
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.4e-181 639.8 413 77.2
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 3.2e-181 638.6 414 77.8
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 7.2e-181 637.5 416 77.9
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.2e-181 637.5 414 77.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.0e-179 633.6 414 77.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.7e-179 630.6 420 76.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.5e-178 629.8 420 76.2
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.3e-178 628.2 412 76.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 4.3e-178 628.2 415 78.1
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.8e-177 624.8 430 74.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 8.2e-177 624.0 439 73.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 375 83.7
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 371 84.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.0e-174 617.1 410 76.8
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 8.8e-171 604.0 415 73.7
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.1e-170 603.6 415 74.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.8e-168 596.3 414 74.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.1e-168 595.1 413 69.7
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.2e-166 589.3 305 98.7
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.9e-165 586.3 415 71.8
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.6e-164 582.0 410 74.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.7e-164 581.6 406 73.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 7.0e-160 567.8 414 71.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.1e-157 560.5 411 72.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 7.2e-157 557.8 371 76.8
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.6e-154 549.3 410 67.1
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.8e-152 543.1 410 66.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 9.4e-149 530.8 323 82.0
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 9.4e-149 530.8 485 61.9
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.8e-147 524.6 412 68.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 5.5e-141 505.0 313 85.0
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.6e-140 503.4 398 64.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.5e-138 496.9 405 59.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.3e-137 493.8 412 60.4
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.5e-135 485.3 294 83.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.3e-134 483.0 294 83.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 9.5e-133 477.6 296 79.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 9.5e-125 451.1 284 83.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.8e-122 441.0 256 85.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-116 422.2 292 79.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.4e-112 410.6 256 78.1
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.3e-109 398.3 314 65.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.9e-107 391.3 285 70.2
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.4e-98 362.5 415 47.7
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.8e-90 335.5 238 73.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.1e-83 314.7 191 81.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-80 302.4 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.0e-78 296.6 205 74.1
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 6.2e-76 288.9 184 77.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-70 270.8 204 71.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.3e-69 266.2 173 75.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 5.1e-62 242.7 399 36.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.3e-61 240.0 199 70.9
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-58 230.7 126 88.9
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.2e-57 227.3 403 34.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-56 223.0 161 77.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-55 221.5 139 80.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.2e-55 221.5 220 53.6
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.6e-55 219.5 321 36.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-54 217.2 177 71.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.2e-48 196.8 114 88.6
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-47 194.5 121 78.5
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-41 174.5 102 83.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.4e-35 154.8 414 30.9
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 85.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.3e-28 129.4 107 59.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-26 124.4 115 60.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.8e-25 120.2 127 61.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.5e-24 118.2 143 53.8
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 6.1e-23 112.8 146 52.7
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-19 100.5 73 76.7
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.4e-19 99.8 99 57.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 5.0e-17 93.2 153 38.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 84.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-12 76.6 54 75.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 81 44.4
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 5.2e-06 56.6 309 24.3


User provided reference genes

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