Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 6.0e-64 247.3 119 100.0
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 3.8e-26 121.7 183 43.2
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 5.0e-26 121.3 183 42.6
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 1.1e-25 120.2 142 51.4
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 1.4e-25 119.8 142 51.4
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 1.4e-25 119.8 142 51.4
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 1.4e-25 119.8 142 51.4
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 1.4e-25 119.8 142 51.4
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 1.4e-25 119.8 142 51.4
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.9e-25 119.4 142 50.0
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 3.2e-25 118.6 142 50.0
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 4.2e-25 118.2 142 49.3
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 4.2e-25 118.2 142 49.3
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 4.2e-25 118.2 142 49.3
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 4.2e-25 118.2 142 49.3
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 5.5e-25 117.9 142 49.3
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 7.2e-25 117.5 142 50.0
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 7.2e-25 117.5 153 47.1
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.2e-25 117.5 153 47.1
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.2e-25 117.5 153 47.1
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.2e-25 117.5 153 47.1
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 7.2e-25 117.5 142 49.3
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 7.2e-25 117.5 153 47.1
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 48.6
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 49.3
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 49.3
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 49.3
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 49.3
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 9.3e-25 117.1 142 49.3
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 49.3
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 49.3
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 49.3
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 49.3
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 1.2e-24 116.7 142 48.6
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.6e-24 116.3 142 48.6
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 1.6e-24 116.3 142 48.6
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 1.6e-24 116.3 142 48.6
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 1.6e-24 116.3 142 48.6
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 1.6e-24 116.3 142 48.6
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 2.1e-24 115.9 153 46.4
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.1e-24 115.9 142 48.6
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.7e-24 115.5 142 47.9
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 2.7e-24 115.5 142 47.9
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 2.7e-24 115.5 142 47.9
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 2.7e-24 115.5 142 48.6
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 3.5e-24 115.2 142 47.9
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 3.5e-24 115.2 142 47.9
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 3.5e-24 115.2 142 47.9
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 3.5e-24 115.2 142 47.9
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 3.5e-24 115.2 142 47.9
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 4.6e-24 114.8 142 48.6
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 4.6e-24 114.8 142 48.6
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 4.6e-24 114.8 147 46.9
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 4.6e-24 114.8 142 47.9
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 6.1e-24 114.4 142 47.9
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 7.9e-24 114.0 142 47.9
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 7.9e-24 114.0 142 47.9
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 7.9e-24 114.0 142 47.9
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 7.9e-24 114.0 142 47.9
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 7.9e-24 114.0 141 47.5
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 7.9e-24 114.0 142 47.9
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.3e-23 113.2 142 46.5
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.3e-23 113.2 142 47.2
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.3e-23 113.2 142 47.2
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 1.8e-23 112.8 142 47.2
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.8e-23 112.8 142 47.2
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 2.3e-23 112.5 153 46.4
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 2.3e-23 112.5 142 47.2
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 5.1e-23 111.3 154 44.8
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 1.1e-22 110.2 131 48.9
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 3.3e-22 108.6 152 45.4
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 9.7e-22 107.1 67 76.1
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 9.7e-22 107.1 156 44.2
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 3.7e-21 105.1 96 57.3
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 6.3e-21 104.4 103 59.2
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 6.3e-21 104.4 67 73.1
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.4e-20 102.4 67 73.1
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 4.1e-20 101.7 63 76.2
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 6.9e-20 100.9 139 44.6
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 1.2e-19 100.1 99 56.6
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 1.2e-19 100.1 99 56.6
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 1.3e-18 96.7 67 68.7
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.2e-18 95.9 67 68.7
BraA06t26075Z Brassica rapa HOM05D000006 ORTHO05D004030 1.6e-16 89.7 55 83.6
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.1e-16 89.4 111 46.8
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 3.6e-16 88.6 63 65.1
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 3.6e-16 88.6 129 45.7
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 4.6e-16 88.2 142 38.0
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 4.6e-16 88.2 67 65.7
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 6.1e-16 87.8 67 62.7
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 7.9e-16 87.4 66 65.2
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 1.4e-15 86.7 67 64.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 3.0e-15 85.5 135 42.2
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 6.7e-15 84.3 66 63.6
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 8.8e-15 84.0 66 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.1e-14 83.6 66 60.6
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 1.5e-14 83.2 63 61.9
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 5.7e-14 81.3 113 42.5
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 3.7e-13 78.6 113 42.5
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 3.7e-13 78.6 63 63.5
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 6.3e-13 77.8 65 61.5
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.4e-12 76.6 95 45.3
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.8e-12 76.3 66 57.6
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 1.5e-11 73.2 80 47.5
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 1.0e-10 70.5 33 97.0
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.3e-07 59.3 47 59.6
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 5.1e-07 58.2 75 41.3


User provided reference genes

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