Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p30540 Brassica napus HOM05D002182 ORTHO05D017531 2.1e-38 161.8 76 100.0
BraA06t26003Z Brassica rapa HOM05D002182 ORTHO05D017531 2.1e-38 161.8 76 100.0
BolC3t18503H Brassica oleracea HOM05D002182 ORTHO05D017531 2.3e-32 141.7 76 90.8
BcaC01g02646 Brassica carinata HOM05D002182 ORTHO05D017531 7.5e-28 126.7 76 82.9
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 1.9e-15 85.5 81 61.7
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 8.9e-13 76.6 91 52.7
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 3.4e-12 74.7 82 53.7
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 9.9e-12 73.2 81 55.6
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 9.9e-12 73.2 81 55.6
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.2e-11 72.0 87 52.9
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 2.9e-11 71.6 86 53.5
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 3.8e-11 71.2 81 54.3
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 3.8e-11 71.2 90 51.1
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 4.9e-11 70.9 78 53.8
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 6.4e-11 70.5 79 53.2
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.2e-09 66.2 79 48.1
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.1e-09 65.5 77 54.5
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 2.7e-09 65.1 80 51.2
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 2.7e-09 65.1 79 48.1
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 4.6e-09 64.3 84 51.2
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 4.6e-09 64.3 79 46.8
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 6.0e-09 63.9 83 50.6
Cpa.g.c33573 Carica papaya HOM05D002182 ORTHO05D017531 6.0e-09 63.9 81 48.1
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.0e-08 63.2 79 46.8
Haze_25328 Corylus avellana HOM05D002182 ORTHO05D017531 1.0e-08 63.2 79 46.8
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 1.0e-08 63.2 78 48.7
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.3e-08 62.8 79 46.8
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.3e-08 62.8 79 45.6
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 1.7e-08 62.4 79 46.8
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.7e-08 62.4 79 49.4
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 2.3e-08 62.0 81 46.9
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 3.0e-08 61.6 77 49.4
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 3.9e-08 61.2 79 45.6
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 5.1e-08 60.8 72 48.6
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 6.6e-08 60.5 79 48.1
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 8.7e-08 60.1 83 47.0
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 8.7e-08 60.1 77 48.1
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 8.7e-08 60.1 82 48.8
Rhsim10G0124100 Rhododendron simsii HOM05D002182 ORTHO05D004671 8.7e-08 60.1 70 47.1
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 8.7e-08 60.1 67 55.2
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 1.9e-07 58.9 75 48.0
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 1.9e-07 58.9 79 46.8
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 5.6e-07 57.4 82 46.3
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 7.3e-07 57.0 75 50.7
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 9.6e-07 56.6 73 49.3
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 9.6e-07 56.6 75 46.7
CSS0000135 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D017531 9.6e-07 56.6 79 48.1
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 9.6e-07 56.6 74 51.4
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 1.2e-06 56.2 76 47.4
SEGI_24428 Sequoiadendron giganteum HOM05D002182 ORTHO05D017531 1.2e-06 56.2 56 58.9
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 1.2e-06 56.2 82 46.3
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.6e-06 55.8 78 47.4
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.6e-06 55.8 73 50.7
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 1.6e-06 55.8 77 45.5
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.8e-06 55.1 77 45.5
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.8e-06 55.1 76 44.7
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 4.7e-06 54.3 89 39.3
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 6.2e-06 53.9 80 42.5
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 6.2e-06 53.9 76 47.4
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 8.1e-06 53.5 81 40.7
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 8.1e-06 53.5 76 46.1


User provided reference genes

Program Settings