Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-101 372.9 185 100.0
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-101 372.9 185 100.0
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-101 372.9 185 100.0
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-101 372.9 185 100.0
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-101 372.9 185 100.0
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-101 371.7 185 99.5
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 99.5
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 99.5
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 99.5
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 5.8e-98 360.9 185 95.7
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.7e-97 359.4 185 95.1
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-96 356.7 182 95.6
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-96 355.5 184 95.7
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.8e-91 339.3 170 99.4
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.8e-91 337.4 185 89.2
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-90 336.7 185 89.2
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 1.3e-89 333.2 182 89.0
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.3e-89 333.2 185 88.6
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.3e-89 333.2 185 88.6
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 3.8e-89 331.6 185 87.6
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 4.9e-89 331.3 185 88.1
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 2.4e-88 328.9 185 87.0
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 3.2e-88 328.6 185 87.6
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.2e-87 326.6 185 88.6
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 6.0e-87 324.3 185 86.5
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.0e-86 323.6 185 86.5
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 2.3e-86 322.4 185 84.9
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-85 318.5 185 84.9
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 4.3e-85 318.2 185 84.9
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 9.6e-85 317.0 185 84.9
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.2e-84 316.6 185 85.9
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 4.7e-84 314.7 185 85.4
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 6.2e-84 314.3 185 84.9
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 9.3e-80 300.4 171 86.0
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 9.3e-80 300.4 171 86.0
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.6e-76 288.5 182 80.2
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 4.8e-76 288.1 141 100.0
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.0e-75 285.0 182 79.7
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 2.0e-74 282.7 185 77.8
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 3.4e-74 282.0 185 76.8
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-72 276.6 182 76.9
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-72 276.6 182 76.9
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.9e-70 268.5 182 75.3
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.3e-68 263.5 185 72.4
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 3.4e-66 255.4 170 74.1
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.9e-65 252.3 158 79.7
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 2.9e-65 252.3 185 71.9
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 8.4e-65 250.8 182 70.9
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-64 249.6 182 70.9
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 2.4e-64 249.2 185 71.9
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 3.9e-62 241.9 120 99.2
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 3.9e-62 241.9 120 99.2
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.5e-61 239.2 119 98.3
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.4e-59 233.4 185 67.6
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.0e-59 231.9 182 66.5
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.3e-57 226.9 133 82.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 4.9e-57 224.9 130 83.8
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.6e-55 219.9 112 95.5
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 1.0e-54 217.2 170 69.4
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.3e-54 216.1 120 86.7
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.3e-54 216.1 120 86.7
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.3e-54 216.1 120 86.7
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 6.7e-54 214.5 118 87.3
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-53 213.8 117 87.2
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.5e-53 213.4 119 86.6
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.3e-53 212.2 120 85.8
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.7e-53 211.5 120 87.5
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.6e-53 210.7 175 65.7
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 1.6e-52 209.9 186 61.8
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 8.2e-52 207.6 194 55.7
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 3.1e-51 205.7 117 84.6
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.1e-51 205.7 120 84.2
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.9e-51 204.5 127 80.3
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 9.0e-51 204.1 120 83.3
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.3e-49 200.3 132 74.2
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 2.9e-49 199.1 120 81.7
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.9e-48 196.4 113 84.1
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.9e-48 196.4 124 80.6
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.9e-48 196.4 141 70.9
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-48 194.9 106 87.7
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 3.0e-46 189.1 187 59.9
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 8.7e-46 187.6 178 48.3
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-43 179.5 110 79.1
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 4.1e-43 178.7 184 48.9
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-42 176.8 98 88.8
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.0e-42 176.4 127 70.9
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 5.9e-42 174.9 97 89.7
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 5.9e-42 174.9 119 71.4
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.7e-42 174.5 148 65.5
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.7e-42 174.5 115 73.9
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.3e-41 173.7 98 85.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.7e-41 173.3 97 87.6
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.7e-41 173.3 97 87.6
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.9e-41 172.6 98 84.7
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.9e-41 172.6 96 87.5
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.8e-41 172.2 186 55.4
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.1e-40 170.6 94 89.4
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 1.1e-40 170.6 94 87.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.4e-40 170.2 94 86.2
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.9e-40 169.9 113 73.5
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 1.9e-40 169.9 163 58.3
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 2.5e-40 169.5 94 89.4
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 3.2e-40 169.1 94 88.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.2e-40 168.7 95 84.2
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 4.2e-40 168.7 190 51.6
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 7.2e-40 167.9 157 59.2
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 7.2e-40 167.9 157 59.2
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 7.2e-40 167.9 97 83.5
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 1.6e-39 166.8 98 83.7
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.1e-39 166.4 96 82.3
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.7e-39 166.0 163 60.1
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 4.6e-39 165.2 189 51.3
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-38 163.7 120 71.7
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 3.0e-38 162.5 95 82.1
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.1e-37 160.6 182 50.0
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 1.5e-37 160.2 176 55.1
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 2.0e-37 159.8 90 83.3
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 7.4e-37 157.9 121 69.4
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 7.4e-37 157.9 89 83.1
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.3e-36 157.1 94 81.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.1e-35 154.1 87 88.5
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 3.1e-35 152.5 117 68.4
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.9e-35 151.4 94 75.5
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.0e-34 149.8 119 61.3
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.9e-34 148.3 131 58.8
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 7.7e-34 147.9 81 91.4
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.7e-34 147.9 86 83.7
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 7.2e-32 141.4 174 46.0
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.6e-31 140.2 92 76.1
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.1e-31 138.3 91 74.7
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.7e-28 129.0 167 47.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.4e-27 126.3 70 85.7
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-25 120.6 60 98.3
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.5e-25 118.2 125 54.4
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-24 116.3 60 93.3
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 4.7e-23 112.1 64 90.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.0e-22 110.9 96 61.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.2e-21 107.5 64 85.9
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 5.7e-21 105.1 72 72.2
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 9.7e-21 104.4 62 83.9
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.7e-20 103.6 62 82.3
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 1.7e-20 103.6 61 85.2
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.8e-20 102.8 70 68.6
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 4.8e-20 102.1 155 42.6
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.8e-19 100.1 122 47.5
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 3.1e-19 99.4 61 82.0
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 3.1e-19 99.4 62 79.0
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.1e-19 99.4 111 50.5
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.2e-17 93.2 53 83.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.2e-17 93.2 53 83.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 6.5e-17 91.7 55 81.8
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.5e-17 91.7 92 53.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-16 90.9 75 60.0
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.5e-16 89.7 118 48.3
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 3.2e-16 89.4 88 59.1
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.2e-16 89.4 75 60.0
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 4.7e-15 85.5 60 68.3
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 5.2e-14 82.0 90 52.2
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 8.8e-14 81.3 52 73.1
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 1.5e-13 80.5 99 49.5
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 2.0e-13 80.1 49 81.6
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 5.4e-11 72.0 49 73.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.0e-10 70.1 49 69.4
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.0e-09 67.8 47 74.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 2.9e-09 66.2 36 88.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 5.0e-09 65.5 33 93.9
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 1.5e-08 63.9 32 87.5
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.1e-07 58.5 36 83.3
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 2.3e-06 56.6 36 69.4


User provided reference genes

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