Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 1.4e-90 336.3 172 100.0
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 1.1e-26 124.0 96 63.5
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 5.5e-26 121.7 59 94.9
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 5.5e-26 121.7 59 94.9
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 5.5e-26 121.7 59 94.9
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 5.5e-26 121.7 59 94.9
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 5.5e-26 121.7 60 91.7
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 5.5e-26 121.7 59 94.9
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 7.2e-26 121.3 81 74.1
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 9.3e-26 120.9 59 91.5
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 91.5
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 91.5
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 1.2e-25 120.6 59 93.2
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 1.6e-25 120.2 59 93.2
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 1.6e-25 120.2 59 91.5
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.6e-25 120.2 59 91.5
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 89.8
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 89.8
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 89.8
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 89.8
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 91.5
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 91.5
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 91.5
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 91.5
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 2.1e-25 119.8 59 91.5
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 91.5
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 91.5
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.7e-25 119.4 59 91.5
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.7e-25 119.4 59 91.5
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 91.5
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 89.8
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 89.8
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 91.5
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 91.5
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 2.7e-25 119.4 59 89.8
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 89.8
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 3.6e-25 119.0 68 82.4
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 89.8
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 91.5
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 89.8
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 89.8
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 3.6e-25 119.0 59 89.8
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 88.1
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 88.1
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 4.6e-25 118.6 59 89.8
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 6.1e-25 118.2 59 88.1
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 6.1e-25 118.2 59 88.1
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 6.1e-25 118.2 59 88.1
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 6.1e-25 118.2 59 89.8
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 7.9e-25 117.9 59 89.8
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 7.9e-25 117.9 59 88.1
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 7.9e-25 117.9 59 88.1
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 7.9e-25 117.9 59 89.8
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 7.9e-25 117.9 59 89.8
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 89.8
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 1.0e-24 117.5 76 73.7
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 1.0e-24 117.5 59 89.8
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 1.0e-24 117.5 59 88.1
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 1.3e-24 117.1 59 88.1
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 1.3e-24 117.1 59 88.1
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.3e-24 117.1 59 88.1
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 1.3e-24 117.1 59 86.4
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 1.8e-24 116.7 59 88.1
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 1.8e-24 116.7 59 88.1
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 2.3e-24 116.3 59 88.1
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 86.4
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 88.1
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 88.1
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 86.4
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 86.4
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 2.3e-24 116.3 59 86.4
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 3.0e-24 115.9 59 84.7
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 86.4
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 3.9e-24 115.5 59 84.7
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 3.9e-24 115.5 57 91.2
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 88.1
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 88.1
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 84.7
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 84.7
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 84.7
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 5.1e-24 115.2 59 88.1
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 6.7e-24 114.8 61 85.2
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 6.7e-24 114.8 59 84.7
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 6.7e-24 114.8 59 84.7
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 8.7e-24 114.4 59 84.7
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 8.7e-24 114.4 59 86.4
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.1e-23 114.0 59 84.7
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.5e-23 113.6 59 84.7
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.5e-23 113.6 59 84.7
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.5e-23 113.6 59 84.7
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 9.7e-23 110.9 59 83.1
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 8.2e-22 107.8 103 58.3
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.1e-21 107.5 79 68.4
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 1.8e-21 106.7 59 81.4
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.4e-21 106.3 77 70.1
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 4.1e-21 105.5 53 88.7
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 7.7e-20 101.3 58 74.1
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 1.0e-19 100.9 57 80.7
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 1.7e-19 100.1 49 89.8
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 1.1e-18 97.4 59 74.6
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 7.2e-18 94.7 68 69.1
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 7.4e-15 84.7 59 71.2
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 2.2e-14 83.2 41 90.2
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 1.8e-13 80.1 77 59.7
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 3.4e-12 75.9 34 100.0
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 7.7e-12 74.7 38 86.8
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 2.9e-11 72.8 35 85.7
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 3.8e-11 72.4 34 91.2
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 3.8e-11 72.4 38 78.9
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 3.8e-11 72.4 41 78.0
BcaC02g09213 Brassica carinata HOM05D001103 ORTHO05D000954 9.4e-10 67.8 38 89.5
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 9.4e-10 67.8 34 85.3
C03p63230 Brassica napus HOM05D001103 ORTHO05D100402 3.0e-08 62.8 55 65.5
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 1.5e-07 60.5 59 54.2
BraA03t10763Z Brassica rapa HOM05D015823 ORTHO05D017626 2.0e-07 60.1 58 58.6
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 3.3e-07 59.3 32 78.1
BcaC04g21901 Brassica carinata HOM05D056268 ORTHO05D039897 7.4e-07 58.2 47 68.1
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 7.4e-07 58.2 32 81.2
BcaC01g06299 Brassica carinata HOM05D015823 ORTHO05D017626 9.7e-07 57.8 66 48.5
A07p11340 Brassica napus HOM05D015823 ORTHO05D017626 1.3e-06 57.4 39 69.2
BcaC01g06297 Brassica carinata HOM05D015823 ORTHO05D017626 2.2e-06 56.6 38 71.1
BcaC01g06298 Brassica carinata HOM05D015823 ORTHO05D017626 2.2e-06 56.6 38 71.1
C09p25980 Brassica napus HOM05D056268 ORTHO05D039897 4.8e-06 55.5 43 69.8
BraA07t28642Z Brassica rapa HOM05D015823 ORTHO05D017626 4.8e-06 55.5 38 73.7


User provided reference genes

Program Settings