Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.3e-187 658.7 323 100.0
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.4e-178 627.9 325 95.1
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 7.1e-176 620.5 323 93.2
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.6e-175 619.4 322 94.1
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.6e-175 619.4 322 94.1
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.6e-175 619.4 322 94.1
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 8.6e-166 587.0 331 88.2
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.5e-162 576.2 331 86.7
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.0e-162 575.9 331 87.0
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.4e-160 569.7 331 85.2
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 7.3e-157 557.4 333 83.8
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.4e-155 552.4 334 82.9
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 6.4e-153 544.3 327 81.7
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 6.9e-147 524.2 324 82.1
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 6.9e-147 524.2 324 82.1
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 6.9e-147 524.2 324 82.1
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 2.8e-140 502.3 324 79.0
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.5e-138 496.5 331 75.5
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 6.0e-135 484.6 327 76.5
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 8.5e-121 437.6 323 68.4
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 8.5e-121 437.6 323 68.4
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.9e-120 436.4 327 67.3
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 5.5e-120 434.9 325 68.3
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 4.6e-119 431.8 320 68.4
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.4e-118 430.3 317 68.8
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 8.8e-118 427.6 321 67.3
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 1.5e-117 426.8 331 64.7
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 7.4e-117 424.5 330 66.4
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 4.1e-115 418.7 351 63.2
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 4.1e-115 418.7 323 66.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 5.3e-115 418.3 323 66.6
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 6.9e-115 417.9 332 65.7
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.2e-114 417.2 321 67.0
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.2e-114 417.2 322 65.2
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.5e-114 416.8 334 64.7
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 4.5e-114 415.2 328 64.9
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 7.7e-114 414.5 321 66.7
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.3e-113 413.7 327 63.3
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.8e-113 412.1 327 65.4
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.9e-112 409.8 367 60.2
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.5e-112 409.5 325 66.2
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.5e-112 409.5 322 65.8
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.5e-112 409.5 329 63.2
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.2e-112 409.1 329 63.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 7.2e-112 407.9 338 63.0
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 7.2e-112 407.9 325 63.4
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 1.2e-111 407.1 324 63.9
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.1e-111 406.4 323 65.3
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 3.6e-111 405.6 322 62.4
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 4.7e-111 405.2 344 61.3
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.0e-110 404.1 327 64.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.8e-110 403.3 327 63.0
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.3e-110 402.9 327 64.5
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 3.0e-110 402.5 332 62.7
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 3.9e-110 402.1 322 62.7
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 5.2e-110 401.7 339 61.4
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 5.2e-110 401.7 319 65.2
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 3.3e-109 399.1 320 64.7
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.3e-108 397.1 276 69.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.3e-108 397.1 338 59.8
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.3e-108 397.1 339 60.2
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.7e-108 396.7 342 61.4
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 2.2e-108 396.4 338 60.7
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.8e-108 396.0 333 62.2
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.8e-108 396.0 325 64.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 4.8e-108 395.2 290 69.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 4.8e-108 395.2 328 61.9
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 8.2e-108 394.4 323 63.5
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.4e-107 392.9 347 59.9
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 7.0e-107 391.3 306 66.3
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 4.5e-106 388.7 325 63.1
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 5.9e-106 388.3 330 61.8
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 2.2e-105 386.3 274 70.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.2e-105 386.3 325 63.1
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 5.0e-105 385.2 325 62.2
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 5.5e-104 381.7 333 60.1
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 3.6e-103 379.0 321 60.7
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.8e-102 376.7 295 65.1
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.3e-102 376.3 318 62.3
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.3e-102 376.3 320 62.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.0e-101 373.2 298 62.1
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.0e-101 373.2 305 59.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 5.7e-101 371.7 300 65.3
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.7e-100 370.2 254 69.7
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.7e-100 369.0 300 64.3
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.2e-100 367.9 340 58.5
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.4e-99 367.1 320 58.8
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 3.1e-99 365.9 307 62.2
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.1e-99 365.5 316 60.4
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 9.1e-99 364.4 322 59.6
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.2e-98 364.0 351 56.7
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.7e-98 362.8 248 72.2
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 4.5e-98 362.1 306 62.7
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.7e-97 360.1 272 64.3
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.0e-94 350.9 242 68.2
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.4e-94 350.5 271 60.9
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.4e-94 350.5 312 59.9
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.0e-94 349.0 269 63.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.6e-93 346.3 268 60.4
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.1e-91 340.9 276 60.5
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.7e-90 336.3 219 74.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 4.5e-90 335.5 208 76.9
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.9e-88 330.1 213 74.2
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 8.0e-87 324.7 288 60.4
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 5.2e-86 322.0 288 60.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 3.1e-83 312.8 275 60.4
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 3.1e-83 312.8 369 49.3
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 4.1e-83 312.4 275 61.1
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-81 307.0 257 57.2
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 5.6e-80 302.0 234 59.4
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.0e-79 298.1 241 58.9
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.0e-77 293.5 241 58.9
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.9e-76 289.7 323 50.5
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 4.1e-75 285.8 228 58.8
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 5.4e-67 258.8 306 47.1
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 7.0e-67 258.5 227 61.2
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.6e-66 257.3 228 61.4
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.4e-62 244.2 222 59.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.5e-61 240.7 168 70.8
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.7e-58 229.9 221 51.6
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 4.3e-56 222.6 288 44.4
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 7.3e-56 221.9 187 56.7
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 3.4e-53 213.0 230 52.6
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.1e-46 191.4 175 58.3
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 2.4e-43 180.3 157 59.9
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 6.6e-41 172.2 222 45.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-38 164.5 188 48.4
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.4e-38 163.7 222 44.1
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 6.9e-38 162.2 168 53.0
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 3.4e-37 159.8 100 75.0
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-35 154.5 188 45.7
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 3.3e-32 143.3 102 70.6
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 7.4e-32 142.1 96 72.9
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.7e-31 139.8 184 42.4
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 8.1e-31 138.7 95 74.7
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.1e-31 138.7 187 43.3
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 2.7e-26 123.6 77 72.7
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-25 121.7 187 38.5
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.3e-24 116.7 213 33.8
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 4.3e-24 116.3 167 43.1
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.6e-24 115.9 139 46.0
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 9.6e-24 115.2 153 42.5
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-23 113.6 175 37.1
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-22 111.3 186 35.5
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 3.1e-22 110.2 82 62.2
AT2G10550 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 9.0e-22 108.6 96 67.7
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-19 100.9 222 31.1
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 5.7e-16 89.4 180 31.7
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.9e-11 74.3 173 30.6
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 4.3e-08 63.2 59 50.8
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-07 61.6 73 45.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-07 61.6 92 37.0


User provided reference genes

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