Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 7.6e-156 553.9 301 100.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 7.6e-156 553.9 301 100.0
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.3e-139 500.0 321 89.1
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 3.8e-139 498.4 321 88.8
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 3.2e-138 495.4 303 92.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 2.0e-132 476.1 302 90.7
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 4.2e-130 468.4 304 86.8
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.5e-127 459.1 305 86.6
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 6.9e-125 451.1 304 83.2
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-121 440.3 303 86.1
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 3.0e-120 435.6 319 79.6
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 3.0e-120 435.6 321 78.5
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 2.5e-119 432.6 309 82.8
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 6.9e-117 424.5 260 89.6
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.6e-113 413.3 216 99.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.0e-112 410.6 311 76.2
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.2e-105 387.1 308 77.6
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.6e-105 386.7 307 73.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.6e-103 379.4 301 69.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 2.6e-103 379.4 294 70.4
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 2.6e-103 379.4 262 76.3
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 7.4e-103 377.9 300 71.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 3.7e-102 375.6 302 71.9
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 2.4e-101 372.9 294 70.1
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.4e-101 372.9 306 69.6
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 3.1e-101 372.5 301 70.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 5.3e-101 371.7 294 70.4
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.2e-100 370.5 292 71.2
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.2e-100 370.5 299 66.9
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.6e-100 369.4 296 70.6
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 2.6e-100 369.4 273 72.9
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 4.5e-100 368.6 262 76.3
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.3e-99 367.1 275 74.5
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.7e-99 366.7 304 65.1
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 2.2e-99 366.3 265 75.8
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 2.9e-99 365.9 303 68.6
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.9e-99 365.9 262 75.2
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 5.0e-99 365.2 302 69.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 5.0e-99 365.2 308 68.5
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 8.5e-99 364.4 273 72.2
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.1e-98 364.0 294 70.1
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.4e-98 363.6 262 75.6
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 1.9e-98 363.2 293 68.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 4.2e-98 362.1 312 69.9
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 7.2e-98 361.3 241 82.2
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 1.6e-97 360.1 269 72.5
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 1.6e-97 360.1 261 77.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 2.1e-97 359.8 219 93.2
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.1e-97 359.8 268 76.1
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 2.1e-97 359.8 255 72.5
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.0e-96 357.5 262 72.5
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.4e-96 357.1 302 66.6
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-96 356.3 217 92.6
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 3.9e-96 355.5 262 72.9
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.2e-96 355.1 280 70.0
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.1e-95 354.0 300 66.7
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.1e-95 354.0 300 65.3
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.5e-95 353.6 296 68.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.5e-95 353.6 305 67.5
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.5e-95 353.6 264 72.3
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.0e-95 353.2 256 73.8
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 2.6e-95 352.8 304 65.5
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 2.6e-95 352.8 296 63.2
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 2.6e-95 352.8 276 72.1
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.4e-95 352.1 295 68.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 2.2e-94 349.7 279 67.0
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.7e-94 349.0 250 70.4
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 8.2e-94 347.8 262 74.0
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.1e-93 347.4 279 68.8
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.4e-93 347.1 280 66.8
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.8e-93 346.7 317 60.9
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.8e-93 346.7 267 67.4
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 4.1e-93 345.5 300 68.0
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 9.1e-93 344.4 270 71.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.2e-92 344.0 262 73.3
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.6e-92 343.6 262 73.3
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.0e-92 343.2 261 70.9
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 5.9e-92 341.7 302 65.2
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.3e-91 340.5 256 71.5
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 6.5e-91 338.2 269 69.9
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.5e-90 337.0 262 67.2
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 4.2e-90 335.5 241 76.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 9.4e-90 334.3 266 67.7
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-89 333.2 269 68.0
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.7e-89 332.8 241 71.0
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 4.7e-89 332.0 245 68.2
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 8.0e-89 331.3 293 63.8
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.3e-88 329.7 258 66.3
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 8.8e-88 327.8 296 64.5
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 3.3e-87 325.9 285 62.1
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 4.4e-87 325.5 254 67.3
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 5.7e-87 325.1 216 76.9
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 5.7e-87 325.1 256 64.8
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.8e-86 322.8 268 70.5
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.7e-86 322.4 262 63.7
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 7.0e-85 318.2 260 71.2
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 5.0e-83 312.0 294 60.2
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 9.4e-82 307.8 367 50.7
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.2e-78 296.6 301 60.1
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 6.3e-78 295.0 220 71.8
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 1.6e-76 290.4 241 63.1
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.2e-74 282.3 234 68.4
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 2.4e-69 266.5 177 76.3
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 7.0e-69 265.0 262 57.6
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 2.7e-68 263.1 186 76.9
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 3.0e-64 249.6 177 72.3
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.2e-64 248.8 284 53.9
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 4.6e-60 235.7 119 99.2
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.3e-59 234.2 119 97.5
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.7e-54 217.2 253 53.0
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 2.9e-54 216.5 245 49.8
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.3e-51 207.6 242 47.9
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 6.2e-49 198.7 242 50.4
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 8.1e-49 198.4 191 57.6
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.4e-48 197.6 140 80.0
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.1e-44 183.7 108 98.1
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 4.3e-42 176.0 171 49.1
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 5.4e-29 132.5 191 48.7
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 2.8e-25 120.2 68 80.9
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.4e-24 117.9 119 53.8
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.1e-24 116.7 215 37.7
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 1.0e-19 101.7 93 60.2
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 2.3e-19 100.5 101 54.5
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.4e-13 81.3 72 61.1
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.2e-13 79.7 71 62.0
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.9e-10 70.9 69 56.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-08 64.3 65 58.5
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 6.9e-08 62.4 65 61.5
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 2.0e-07 60.8 62 61.3
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 4.9e-06 56.2 33 66.7


User provided reference genes

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