Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-203 711.4 343 100.0
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.2e-203 711.4 343 100.0
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.2e-203 710.3 343 99.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 6.1e-202 707.2 343 99.4
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 6.1e-202 707.2 343 99.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.3e-199 699.5 343 98.8
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 5.7e-192 674.1 343 94.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.1e-190 667.9 343 93.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.3e-190 667.5 344 94.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-189 666.0 343 93.9
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.1e-187 659.8 342 93.0
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.7e-180 636.0 354 86.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 5.6e-171 604.4 342 83.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.2e-158 562.0 341 77.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.7e-157 558.9 343 77.6
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.1e-155 553.5 343 77.0
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.9e-155 552.7 341 76.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 6.2e-154 547.7 341 76.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 6.2e-154 547.7 341 75.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 8.1e-154 547.4 341 76.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.3e-153 545.8 344 76.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 8.9e-153 543.9 339 74.9
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.2e-152 543.5 309 80.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.9e-152 540.4 341 74.5
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.9e-152 540.4 322 77.3
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.9e-151 538.9 343 73.8
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.4e-150 535.8 346 74.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.4e-150 535.8 339 74.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.1e-150 535.0 336 74.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 9.2e-150 533.9 341 74.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.1e-149 532.7 340 74.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 7.8e-149 530.8 331 74.3
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 7.8e-149 530.8 346 72.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.0e-148 530.4 339 74.6
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.3e-148 529.3 322 76.4
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.3e-148 529.3 343 73.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 5.1e-148 528.1 341 73.3
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 5.1e-148 528.1 341 73.6
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 8.6e-148 527.3 342 73.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 8.6e-148 527.3 309 79.6
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.1e-147 526.9 339 72.3
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.9e-147 526.2 341 72.7
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 7.3e-147 524.2 349 71.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 9.5e-147 523.9 341 73.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.1e-146 522.7 341 71.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.1e-146 522.7 331 73.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.1e-145 520.4 341 71.3
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.1e-145 520.4 332 72.3
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.4e-145 519.2 339 73.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 3.1e-145 518.8 343 71.4
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 4.0e-145 518.5 339 73.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.9e-145 517.3 339 72.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.6e-144 515.8 331 72.8
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.4e-144 515.4 331 72.5
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 4.4e-144 515.0 343 70.8
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 5.8e-144 514.6 341 71.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 5.8e-144 514.6 352 70.2
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.8e-144 514.6 347 71.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.3e-143 513.5 340 71.2
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-143 513.5 341 71.8
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.3e-143 513.5 346 70.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.7e-143 513.1 344 71.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.9e-143 512.3 331 72.2
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.8e-143 511.9 332 71.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.9e-143 511.5 340 70.6
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 6.4e-143 511.1 341 70.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 8.4e-143 510.8 323 75.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 8.4e-143 510.8 341 71.6
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 331 72.5
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.9e-142 509.6 341 71.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.4e-142 508.1 334 70.1
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 7.1e-142 507.7 341 73.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.1e-142 507.7 331 72.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.1e-142 507.7 334 70.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-141 506.9 308 75.0
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.2e-141 506.9 308 75.0
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.2e-141 506.9 339 71.1
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.0e-140 503.8 342 70.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 3.0e-140 502.3 341 69.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 3.9e-140 501.9 339 70.8
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 6.6e-140 501.1 310 73.9
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.3e-139 498.4 338 70.1
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.6e-138 495.4 339 69.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.1e-138 494.2 342 69.9
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.1e-137 493.8 309 73.8
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.3e-137 491.5 341 69.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 3.4e-136 488.8 335 67.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.6e-136 487.6 388 62.1
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.8e-135 485.3 338 67.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.4e-135 484.6 319 71.2
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.4e-134 483.4 347 67.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.4e-134 483.4 325 70.5
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.2e-134 481.9 324 71.6
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 9.3e-134 480.7 340 65.0
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.7e-133 479.2 305 74.4
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-132 477.2 340 66.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 3.0e-132 475.7 340 66.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 5.6e-131 471.5 341 65.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.1e-129 465.7 300 71.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.1e-129 465.7 317 69.4
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.3e-129 464.9 339 66.4
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-128 463.0 321 70.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-127 460.3 334 67.1
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 4.9e-127 458.4 320 70.6
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 6.4e-127 458.0 363 62.3
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.1e-126 457.2 346 64.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.0e-124 450.7 341 63.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.0e-124 450.7 354 63.8
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.9e-124 448.7 307 67.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.3e-123 445.3 339 63.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.7e-122 442.2 319 65.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 8.1e-122 441.0 266 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 5.3e-121 438.3 321 64.2
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 5.3e-121 438.3 310 64.5
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 6.9e-121 438.0 224 93.3
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.6e-120 436.0 264 76.9
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.7e-119 433.3 341 62.5
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.2e-118 429.1 316 62.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.7e-117 426.0 284 68.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.1e-115 420.6 290 68.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.6e-114 416.8 246 80.1
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.1e-113 414.1 316 62.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.8e-113 413.3 309 63.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.3e-108 397.1 314 59.9
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.1e-107 394.0 288 64.6
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.7e-99 365.2 407 48.2
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 6.1e-93 345.1 306 58.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.1e-89 332.8 237 64.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.3e-87 327.4 243 62.6
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.7e-87 327.0 261 61.3
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 8.2e-82 308.1 247 59.9
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.8e-79 299.3 305 49.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.0e-71 274.6 269 52.8
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.2e-71 273.5 305 46.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 7.2e-70 268.5 175 73.1
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.4e-68 264.2 169 73.4
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 8.6e-55 218.4 179 61.5
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 9.5e-54 214.9 140 68.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.6e-51 206.8 131 72.5
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.0e-47 192.6 125 72.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 7.1e-33 145.6 94 73.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.1e-28 131.7 169 47.3
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 7.1e-25 119.0 66 81.8
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.7e-24 117.1 64 81.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.3e-23 114.0 99 53.5
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 7.3e-22 109.0 70 74.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-16 91.3 55 74.5
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.7e-16 90.5 170 34.7
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.6e-13 81.3 198 30.3
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.8e-13 80.5 80 51.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.5e-11 74.7 67 50.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.5e-11 73.2 245 27.8
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.5e-11 73.2 184 28.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.1e-09 68.6 58 58.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 5.4e-09 66.2 213 28.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-08 65.1 95 34.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 7.9e-08 62.4 37 83.8
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.3e-07 60.8 37 81.1
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.0e-07 60.5 41 68.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.9e-07 60.1 154 28.6
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 6.7e-07 59.3 79 44.3
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 8.7e-07 58.9 156 26.3
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.9e-06 57.8 115 31.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.9e-06 57.8 179 27.9
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.3e-06 57.0 42 57.1
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 3.3e-06 57.0 169 31.4
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 153 26.1
CBR_g41172 Chara braunii HOM05D015906 ORTHO05D028597 7.4e-06 55.8 201 27.4
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 26.1
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 26.1
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 26.8
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 25.7


User provided reference genes

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