Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1161.0 594 100.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 0.0e+00 1149.8 595 99.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1143.6 594 98.7
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 0.0e+00 1143.6 594 98.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1139.8 594 98.3
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1095.9 603 94.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.1e-312 1073.5 598 92.8
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.9e-300 1034.6 600 90.3
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.4e-291 1005.0 596 88.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 5.1e-289 997.3 595 87.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.5e-288 995.0 594 86.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.1e-287 991.9 595 86.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.3e-272 941.4 577 85.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 9.4e-251 870.2 599 75.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.2e-226 790.0 597 69.0
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.4e-225 786.6 605 69.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.5e-224 783.1 599 67.9
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 9.8e-224 780.4 544 72.8
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.4e-222 776.5 534 73.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.2e-222 775.4 577 69.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.4e-222 774.6 599 69.1
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 9.2e-222 773.9 592 68.8
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.6e-221 771.5 599 68.4
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.6e-221 771.5 617 65.6
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.6e-221 771.5 595 68.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 5.0e-220 768.1 557 70.6
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 5.0e-220 768.1 557 70.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 5.0e-220 768.1 610 66.7
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 6.6e-220 767.7 584 68.8
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.1e-219 766.9 598 66.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.1e-219 766.9 559 70.7
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 7.3e-219 764.2 604 66.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.1e-218 762.7 603 67.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 4.7e-218 761.5 597 67.7
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 6.2e-218 761.1 583 69.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.4e-217 760.0 597 65.8
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.8e-217 759.6 584 68.3
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-217 759.6 509 74.1
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 2.3e-217 759.2 543 72.0
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.0e-217 758.4 598 68.1
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 4.0e-217 758.4 594 66.7
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 5.2e-217 758.1 604 66.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.5e-216 756.5 597 66.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.0e-216 756.1 543 71.1
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.6e-216 755.7 543 70.9
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.6e-216 755.7 545 71.2
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.4e-216 755.4 575 67.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.2e-215 752.7 597 65.8
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.9e-214 749.6 623 65.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 2.4e-214 749.2 598 66.1
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 573 68.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.4e-214 749.2 596 65.9
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 602 65.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.2e-213 746.9 602 65.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.7e-213 745.7 546 69.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 3.5e-213 745.3 583 66.6
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.6e-213 745.0 509 71.9
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 7.8e-213 744.2 582 66.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.3e-212 743.4 546 70.5
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.7e-212 743.0 571 67.8
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.7e-212 743.0 602 65.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 8.6e-212 740.7 500 74.4
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.1e-211 740.3 499 74.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.5e-211 739.2 593 66.6
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.3e-211 738.8 603 65.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 4.3e-211 738.4 600 66.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.2e-210 736.9 503 73.8
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.6e-210 736.5 600 65.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.2e-210 734.6 591 65.7
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.1e-210 734.2 608 65.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.3e-209 732.6 594 64.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 3.1e-209 732.3 611 64.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 4.0e-209 731.9 528 69.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.2e-208 730.3 596 65.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 9.8e-208 727.2 569 66.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.1e-206 721.8 538 69.1
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.6e-205 718.4 513 69.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-203 713.0 638 61.1
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.6e-203 711.4 546 66.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.1e-201 707.2 612 63.7
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.8e-201 706.4 578 66.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.7e-199 699.9 615 62.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.4e-198 696.0 676 58.0
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.7e-197 692.6 549 66.7
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.7e-197 692.6 571 65.5
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 6.6e-196 688.0 566 63.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.3e-195 685.6 577 62.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 7.3e-195 684.5 565 63.2
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 9.9e-192 674.1 460 74.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 9.3e-190 667.5 565 61.9
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.6e-189 666.8 507 67.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.7e-188 663.3 558 63.3
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 5.1e-188 661.8 659 58.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-183 647.1 590 58.3
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.1e-182 644.0 586 60.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.1e-181 639.8 459 69.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.3e-179 632.1 491 62.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 9.0e-177 624.4 566 58.7
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.2e-174 615.9 510 62.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.6e-173 613.6 644 53.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.9e-165 584.7 481 65.1
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 8.2e-162 574.7 439 65.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.2e-160 570.9 372 75.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.6e-160 569.7 559 55.6
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.3e-158 561.2 443 61.9
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.0e-156 556.2 558 55.0
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.5e-134 483.4 526 52.3
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.7e-130 469.5 345 69.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 6.3e-130 468.8 494 51.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-129 466.1 443 51.9
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.9e-127 459.9 484 50.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.1e-126 458.0 450 50.7
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.0e-124 449.5 409 64.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 4.8e-122 442.6 422 61.1
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.9e-118 430.6 442 53.2
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-116 424.1 509 49.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.2e-112 411.4 437 54.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 5.4e-105 386.0 487 45.2
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.6e-103 379.0 267 72.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.7e-93 346.3 283 60.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.1e-85 320.9 204 74.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.1e-73 282.0 173 78.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.6e-72 276.6 296 51.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.1e-70 271.9 262 51.1
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 6.2e-69 266.2 211 66.8
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.1e-69 265.8 202 62.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 5.3e-68 263.1 391 39.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.4e-65 255.0 276 50.7
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.9e-58 230.7 178 64.0
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-57 228.0 271 48.0
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 7.1e-57 226.1 293 43.7
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.9e-54 218.0 133 76.7
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.8e-45 187.6 113 78.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.8e-44 184.9 126 70.6
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.9e-43 179.9 177 56.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 7.2e-41 172.9 272 39.7
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 9.1e-36 156.0 122 65.6
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.5e-33 146.7 269 35.7
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.0e-31 142.5 122 59.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 4.4e-30 137.1 106 63.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-26 125.2 95 67.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.2e-24 119.0 120 50.8
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.7e-24 117.1 105 55.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 6.1e-24 116.7 267 32.2
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-20 105.1 96 55.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 3.1e-20 104.4 77 66.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.1e-20 102.8 112 47.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 5.9e-19 100.1 83 55.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.7e-18 98.6 56 87.5
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.9e-18 97.8 232 35.3
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.2e-16 92.4 57 80.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.6e-16 92.0 59 76.3
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 4.4e-14 84.0 69 59.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.7e-14 82.8 54 74.1
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 6.3e-13 80.1 69 56.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.8e-12 78.6 246 28.9
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 7.7e-11 73.2 109 40.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 3.8e-10 70.9 278 25.5
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.0e-08 63.2 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.0e-06 58.5 34 79.4


User provided reference genes

Program Settings