Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p18660 Brassica napus HOM05D003126 ORTHO05D010530 1.9e-142 509.2 267 100.0
BraA04t17476Z Brassica rapa HOM05D003126 ORTHO05D010530 3.0e-87 325.9 203 87.2
Thhalv10000139m.g Eutrema salsugineum HOM05D003126 ORTHO05D010530 1.2e-56 224.2 353 45.3
CARHR117720 Cardamine hirsuta HOM05D003126 ORTHO05D010530 2.5e-46 189.9 373 39.9
AL4G14744 Arabidopsis lyrata HOM05D003126 ORTHO05D010530 8.2e-45 184.9 380 38.4
AT2G24350 Arabidopsis thaliana HOM05D003126 ORTHO05D010530 1.2e-40 171.0 380 37.1
Carub.0004s0368 Capsella rubella HOM05D003126 ORTHO05D010530 2.3e-39 166.8 381 39.1
Aa31LG7G12400 Aethionema arabicum HOM05D003126 ORTHO05D010530 2.6e-30 136.7 359 33.7
Sp4g03350 Schrenkiella parvula HOM05D003126 ORTHO05D010530 1.7e-29 134.0 154 56.5
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 5.2e-15 85.9 125 40.8
Hma1.2p1_1382F.1_g279410 Hydrangea macrophylla HOM05D003126 ORTHO05D010530 6.8e-15 85.5 127 42.5
GSVIVG01035585001 Vitis vinifera HOM05D003126 ORTHO05D010530 3.4e-14 83.2 129 41.1
CSS0022881 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D010530 4.4e-14 82.8 123 40.7
Rhsim03G0058300 Rhododendron simsii HOM05D003126 ORTHO05D010530 5.7e-14 82.4 141 38.3
TAR383G0388 Trochodendron aralioides HOM05D003126 ORTHO05D010530 9.8e-14 81.6 141 37.6
CDE07G0165 Ceratophyllum demersum HOM05D003126 ORTHO05D010530 1.3e-13 81.3 169 32.5
Atru.chr7.2706 Acer truncatum HOM05D003126 ORTHO05D010530 2.2e-13 80.5 123 39.8
FAN09G1633 Fragaria x ananassa HOM05D003126 ORTHO05D010530 2.2e-13 80.5 156 34.0
Potri.012G145050 Populus trichocarpa HOM05D003126 ORTHO05D010530 4.8e-13 79.3 125 38.4
Cfa017786 Carpinus fangiana HOM05D003126 ORTHO05D010530 8.3e-13 78.6 154 35.7
CANSAT01G1393 Cannabis sativa HOM05D003126 ORTHO05D010530 1.1e-12 78.2 137 38.7
Actinidia03328 Actinidia chinensis HOM05D003126 ORTHO05D010530 1.8e-12 77.4 124 39.5
RcHm_v2.0_Chr2g0150031 Rosa chinensis HOM05D003126 ORTHO05D010530 1.8e-12 77.4 142 33.8
FvH4_6g37250 Fragaria vesca HOM05D003126 ORTHO05D010530 2.4e-12 77.0 156 32.7
FAN14G4997 Fragaria x ananassa HOM05D003126 ORTHO05D010530 2.4e-12 77.0 156 32.7
Nn8g41232 Nelumbo nucifera HOM05D003126 ORTHO05D010530 3.1e-12 76.6 124 37.9
MD17G1145400 Malus domestica HOM05D003126 ORTHO05D010530 4.1e-12 76.3 122 39.3
MBI16_g00828_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D010530 5.4e-12 75.9 151 37.1
Prupe.3G017800 Prunus persica HOM05D003126 ORTHO05D010530 5.4e-12 75.9 126 38.9
CiPaw.16G077600 Carya illinoinensis HOM05D003126 ORTHO05D010530 7.0e-12 75.5 104 41.3
QL06p053594 Quercus lobata HOM05D003126 ORTHO05D010530 4.5e-11 72.8 124 36.3
Gohir.D05G009001 Gossypium hirsutum HOM05D003126 ORTHO05D010530 5.9e-11 72.4 137 34.3
Gohir.A05G008200 Gossypium hirsutum HOM05D003126 ORTHO05D010530 1.7e-10 70.9 137 34.3
Thecc.09G153400 Theobroma cacao HOM05D003126 ORTHO05D010530 1.7e-10 70.9 122 37.7
Os04g0306800 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 6.5e-10 68.9 157 34.4
Gorai.009G009200 Gossypium raimondii HOM05D003126 ORTHO05D010530 2.5e-09 67.0 132 35.6
vmacro07518 Vaccinium macrocarpon HOM05D003126 ORTHO05D010530 4.2e-09 66.2 148 33.8
COL.COLO4_05708 Corchorus olitorius HOM05D003126 ORTHO05D010530 5.5e-09 65.9 124 38.7
Haze_18439 Corylus avellana HOM05D003126 ORTHO05D010530 9.4e-09 65.1 153 34.0
HPP92_010425 Vanilla planifolia HOM05D003126 ORTHO05D010530 2.7e-08 63.5 244 28.3
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 4.0e-07 59.7 84 41.7
Aqoxy7G02661 Aquilegia oxysepala HOM05D003126 ORTHO05D010530 5.2e-07 59.3 129 31.0
SMO116G0171 Selaginella moellendorffii HOM05D003126 ORTHO05D005034 5.2e-07 59.3 82 39.0
ATR0626G022 Amborella trichopoda HOM05D003126 ORTHO05D010530 6.8e-07 58.9 156 28.2
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 8.8e-07 58.5 110 35.5
Potri.006G079800 Populus trichocarpa HOM05D003126 ORTHO05D010530 1.2e-06 58.2 141 34.8
QL06p053589 Quercus lobata HOM05D003126 ORTHO05D005034 1.2e-06 58.2 66 45.5
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 1.2e-06 58.2 83 38.6
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.2e-06 58.2 83 41.0
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.2e-06 58.2 83 41.0
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 1.5e-06 57.8 78 41.0
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 1.5e-06 57.8 83 37.3
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 2.0e-06 57.4 78 41.0
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 2.6e-06 57.0 78 39.7
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 3.4e-06 56.6 80 40.0
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 3.4e-06 56.6 83 39.8
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 3.4e-06 56.6 83 41.0
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 3.4e-06 56.6 83 42.2
Cpa.g.sc245.7 Carica papaya HOM05D003126 ORTHO05D005034 4.4e-06 56.2 83 39.8
FAN01G1724 Fragaria x ananassa HOM05D003126 ORTHO05D005034 4.4e-06 56.2 78 39.7
Sabra06G0060400 Salix brachista HOM05D000412 ORTHO05D000429 4.4e-06 56.2 121 37.2
Thecc.09G000900 Theobroma cacao HOM05D003126 ORTHO05D005034 4.4e-06 56.2 74 40.5
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 4.4e-06 56.2 82 41.5
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 39.7
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 39.7
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 37.2
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 5.7e-06 55.8 83 39.8
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 5.7e-06 55.8 83 39.8
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 5.7e-06 55.8 83 39.8
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 39.7
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 39.7
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 5.7e-06 55.8 115 33.9
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 39.7
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 5.7e-06 55.8 78 41.0
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 7.5e-06 55.5 78 39.7
PSO170G0504 Papaver somniferum HOM05D003126 ORTHO05D010530 7.5e-06 55.5 165 28.5
Pp3c3_23400 Physcomitrium patens HOM05D003126 ORTHO05D005034 7.5e-06 55.5 127 30.7
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 7.5e-06 55.5 79 40.5
SEGI_13079 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 7.5e-06 55.5 78 41.0
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 39.7
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 9.8e-06 55.1 83 36.1
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 38.5
CiPaw.16G078100 Carya illinoinensis HOM05D003126 ORTHO05D005034 9.8e-06 55.1 66 45.5
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 37.2
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 39.7
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 39.7
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 9.8e-06 55.1 78 39.7
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 9.8e-06 55.1 83 38.6


User provided reference genes

Program Settings