Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-157 560.1 312 100.0
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-150 535.0 335 91.3
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.8e-150 535.0 335 91.3
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.5e-146 523.1 336 90.5
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 9.0e-144 513.8 338 87.9
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.8e-142 508.4 338 85.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.9e-142 508.1 344 86.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 6.4e-142 507.7 338 87.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 9.3e-141 503.8 347 86.2
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.6e-140 503.1 338 84.6
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.1e-140 502.7 338 84.0
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.8e-139 499.6 347 84.7
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 3.0e-139 498.8 363 82.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.8e-137 492.3 331 88.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 3.8e-134 481.9 328 85.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.9e-130 469.5 338 81.4
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 2.8e-129 465.7 513 60.4
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.4e-128 463.4 337 79.5
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 6.9e-128 461.1 338 79.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 2.0e-127 459.5 338 79.3
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.6e-127 459.1 337 79.8
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.6e-127 459.1 338 79.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 3.4e-127 458.8 340 79.1
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.4e-127 458.8 336 79.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.5e-127 458.4 316 80.7
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 4.5e-127 458.4 339 78.8
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.9e-127 458.0 338 79.9
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 7.6e-127 457.6 338 79.9
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.0e-126 457.2 338 75.1
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.0e-126 457.2 337 79.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.3e-126 456.8 337 78.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.3e-126 456.8 338 79.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.2e-126 456.1 338 78.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.9e-126 455.7 338 79.6
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.9e-126 455.7 338 79.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.8e-126 455.3 338 79.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 3.8e-126 455.3 338 79.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 6.5e-126 454.5 338 79.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 8.5e-126 454.1 338 78.4
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.4e-125 453.4 350 76.6
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.9e-125 453.0 353 76.2
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 4.2e-125 451.8 334 78.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 4.2e-125 451.8 339 78.5
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.5e-125 451.4 339 77.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.6e-124 449.9 334 76.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.1e-124 449.5 338 77.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.1e-124 449.5 337 78.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.1e-124 449.5 339 77.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.7e-124 449.1 338 77.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.7e-124 449.1 342 77.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.7e-124 449.1 338 78.4
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.6e-124 448.4 338 77.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.0e-123 447.2 340 77.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.3e-123 446.8 338 77.8
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.8e-123 446.4 341 77.4
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 5.1e-123 444.9 338 77.5
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.1e-123 444.9 338 78.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.7e-123 444.5 337 77.7
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 8.7e-123 444.1 339 77.0
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.1e-122 443.7 338 76.6
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.1e-122 443.7 341 77.7
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.9e-122 443.0 338 76.3
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.9e-122 443.0 333 78.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 4.3e-122 441.8 335 79.1
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 4.3e-122 441.8 337 76.9
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 5.7e-122 441.4 338 77.5
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.4e-122 441.0 338 70.1
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 2.8e-121 439.1 336 77.1
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 4.8e-121 438.3 337 76.3
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 4.8e-121 438.3 337 76.3
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 6.3e-121 438.0 339 76.4
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 6.3e-121 438.0 338 77.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.4e-120 436.8 363 71.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.4e-120 436.8 338 77.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.4e-120 436.8 338 77.2
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.8e-120 436.4 337 77.7
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.8e-120 436.4 338 75.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.8e-120 436.4 338 77.2
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.8e-120 436.4 338 77.2
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 2.4e-120 436.0 337 76.6
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.4e-120 436.0 341 77.1
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.0e-119 433.0 360 73.3
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 4.5e-119 431.8 373 71.0
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.0e-118 430.6 328 78.0
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.8e-118 428.7 338 76.0
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-117 426.8 356 73.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-117 426.8 356 73.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.6e-116 423.3 337 76.3
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.6e-116 423.3 322 77.0
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 6.1e-116 421.4 353 73.1
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 7.9e-116 421.0 337 75.7
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.8e-115 419.9 338 74.0
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.3e-115 419.5 348 73.3
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.3e-115 419.5 338 72.8
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 5.1e-115 418.3 338 74.0
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 6.7e-115 417.9 322 78.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.8e-115 417.5 341 70.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.6e-114 416.0 337 68.8
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.2e-113 412.9 336 72.3
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-112 409.8 326 76.1
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-112 409.8 326 76.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 3.1e-112 409.1 322 76.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.6e-111 406.0 378 66.9
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.9e-110 402.5 335 72.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.9e-108 394.4 366 66.9
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.9e-108 394.4 366 66.9
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.5e-106 390.2 337 64.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.0e-106 389.8 306 78.8
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 6.1e-100 368.2 285 77.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.2e-97 359.8 353 65.7
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.2e-93 345.9 335 68.7
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.5e-90 337.0 225 76.4
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.2e-89 333.2 257 80.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-88 330.5 260 78.5
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.1e-88 328.9 331 65.6
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.8e-83 313.5 308 66.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 2.2e-81 306.6 313 65.8
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.9e-77 293.5 334 58.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.6e-77 292.0 263 68.1
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.4e-75 287.3 331 59.2
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.5e-69 267.3 383 42.6
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.1e-68 263.5 327 49.8
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 7.8e-63 245.0 147 81.6
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 7.5e-58 228.4 207 71.5
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 3.5e-55 219.5 165 78.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.3e-54 217.6 162 70.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.3e-51 206.8 327 42.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 2.7e-39 166.8 116 72.4
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-36 157.5 92 87.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-32 144.8 89 86.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.7e-31 140.2 64 96.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.5e-31 139.8 89 82.0
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.4e-19 100.5 45 100.0
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 5.1e-14 82.8 64 62.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.5e-13 80.5 203 28.6
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-11 75.1 41 90.2
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.1e-11 73.6 41 85.4
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.1e-11 73.2 54 66.7
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.5e-10 69.7 79 75.9
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.7e-09 67.8 30 90.0
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.0e-09 66.2 200 28.5
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.3e-06 57.4 29 89.7


User provided reference genes

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