Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 6.8e-60 233.8 119 100.0
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 6.8e-60 233.8 119 100.0
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-56 222.6 120 96.7
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 7.6e-51 203.8 103 100.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 7.6e-51 203.8 103 100.0
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 7.6e-51 203.8 103 100.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 7.6e-51 203.8 103 100.0
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 9.9e-51 203.4 103 99.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.4e-49 197.6 103 96.1
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 5.4e-49 197.6 103 96.1
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 5.4e-49 197.6 103 96.1
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 7.1e-49 197.2 103 95.1
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 7.1e-49 197.2 103 95.1
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 7.1e-49 197.2 103 95.1
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 7.1e-49 197.2 103 95.1
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-48 196.1 103 95.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.0e-47 193.4 103 93.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 8.7e-47 190.3 103 92.2
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.9e-46 189.1 103 93.2
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 9.6e-46 186.8 103 88.3
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.6e-45 186.0 103 89.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.6e-45 186.0 103 88.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.1e-45 185.7 103 88.3
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 2.8e-45 185.3 94 98.9
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 4.8e-45 184.5 102 88.2
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 6.2e-45 184.1 103 88.3
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.1e-44 183.3 103 87.4
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.4e-44 183.0 103 87.4
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.4e-44 182.2 103 87.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.4e-44 182.2 103 86.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 3.1e-44 181.8 103 89.3
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.1e-44 181.8 103 88.3
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.1e-44 181.8 103 87.4
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.1e-44 181.8 103 87.4
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 3.1e-44 181.8 103 87.4
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.0e-44 181.4 103 83.5
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 5.3e-44 181.0 103 87.4
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.3e-44 181.0 103 87.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 5.3e-44 181.0 103 88.3
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 6.9e-44 180.6 103 87.4
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 6.9e-44 180.6 103 85.4
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.2e-43 179.9 103 84.5
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.5e-43 179.5 103 87.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.5e-43 179.5 103 86.4
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.5e-43 179.5 103 84.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.0e-43 179.1 103 88.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 2.0e-43 179.1 103 84.5
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.0e-43 179.1 103 86.4
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.6e-43 178.7 103 86.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.6e-43 178.7 103 86.4
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.6e-43 178.7 103 85.4
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.6e-43 178.7 103 86.4
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.6e-43 178.7 103 85.4
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 84.5
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 84.5
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 84.5
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 86.4
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 84.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.4e-43 178.3 103 85.4
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 4.5e-43 177.9 103 85.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.8e-43 177.6 103 87.4
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.8e-43 177.6 103 85.4
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 5.8e-43 177.6 103 84.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 7.6e-43 177.2 103 85.4
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 7.6e-43 177.2 103 85.4
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 7.6e-43 177.2 103 87.4
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 9.9e-43 176.8 103 87.4
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.9e-43 176.8 103 84.5
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.3e-42 176.4 103 83.5
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-42 176.4 103 83.5
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-42 176.4 103 83.5
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.3e-42 176.4 103 84.5
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.7e-42 176.0 103 84.5
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.7e-42 176.0 103 85.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.7e-42 176.0 103 84.5
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 2.2e-42 175.6 103 84.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.2e-42 175.6 103 83.5
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 2.2e-42 175.6 103 85.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.9e-42 175.3 121 82.6
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.9e-42 175.3 103 83.5
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.9e-42 174.5 103 84.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 4.9e-42 174.5 103 83.5
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.4e-42 174.1 103 84.5
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 6.4e-42 174.1 103 84.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.4e-42 174.1 103 83.5
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.4e-42 174.1 103 83.5
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 6.4e-42 174.1 103 84.5
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 8.4e-42 173.7 103 81.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.1e-41 173.3 103 82.5
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 2.4e-41 172.2 103 80.6
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.4e-41 172.2 103 80.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.2e-41 171.8 103 83.5
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.2e-41 171.8 103 81.6
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.2e-41 171.4 103 82.5
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 4.2e-41 171.4 103 84.5
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 5.4e-41 171.0 103 83.5
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 7.1e-41 170.6 101 81.2
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 9.3e-41 170.2 103 81.6
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 9.3e-41 170.2 103 82.5
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 9.3e-41 170.2 104 77.9
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-40 169.9 103 82.5
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.6e-40 169.5 103 81.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.1e-40 169.1 109 78.0
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.1e-40 169.1 104 76.9
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.1e-40 169.1 103 80.6
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 3.5e-40 168.3 103 80.6
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 3.5e-40 168.3 103 81.6
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.5e-40 168.3 103 81.6
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 3.5e-40 168.3 103 81.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 3.5e-40 168.3 103 81.6
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 4.6e-40 167.9 103 81.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.6e-40 167.9 103 81.6
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.0e-40 167.5 103 81.6
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 6.0e-40 167.5 103 80.6
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 6.0e-40 167.5 103 79.6
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.9e-40 167.2 103 79.6
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.3e-39 166.4 112 76.8
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.8e-39 166.0 103 79.6
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 3.3e-38 161.8 96 81.2
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.7e-37 158.3 103 73.8
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.9e-34 147.9 103 68.9
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.9e-34 147.9 103 68.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 8.4e-34 147.1 105 66.7
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.1e-33 146.7 103 66.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.4e-33 146.4 112 63.4
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.3e-33 143.7 94 75.5
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.1e-29 132.5 78 84.6
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.5e-27 126.3 110 66.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 5.8e-27 124.4 70 87.1
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.6e-21 106.3 103 51.5
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.8e-21 104.8 81 67.9
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.1e-20 102.1 103 47.6
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 2.2e-18 95.9 62 74.2
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.9e-18 95.5 83 50.6
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.9e-17 92.8 95 48.4
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.7e-13 78.6 94 42.6
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.1e-09 67.0 33 93.9


User provided reference genes

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