Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p47520 Brassica napus HOM05D000282 ORTHO05D005428 1.4e-30 135.6 64 100.0
A03p65660 Brassica napus HOM05D005264 ORTHO05D005428 1.4e-30 135.6 64 100.0
A05p28360 Brassica napus HOM05D000282 ORTHO05D005428 1.4e-30 135.6 64 100.0
A10p17030 Brassica napus HOM05D005264 ORTHO05D005428 1.4e-30 135.6 64 100.0
A02p38960 Brassica napus HOM05D000282 ORTHO05D005428 4.4e-29 130.6 66 97.0
BraA03t13866Z Brassica rapa HOM05D000282 ORTHO05D005428 4.4e-29 130.6 66 97.0
A07p35900 Brassica napus HOM05D000282 ORTHO05D000272 1.7e-28 128.6 59 100.0
A09p17330 Brassica napus HOM05D000282 ORTHO05D005428 1.8e-27 125.2 66 93.9
A09p31950 Brassica napus HOM05D000282 ORTHO05D005428 1.8e-27 125.2 66 93.9
C06p23970 Brassica napus HOM05D000282 ORTHO05D005428 1.8e-27 125.2 66 93.9
BraA09t37361Z Brassica rapa HOM05D000282 ORTHO05D005428 1.8e-27 125.2 66 93.9
BraA06t25936Z Brassica rapa HOM05D000282 ORTHO05D005428 4.1e-27 124.0 66 92.4
A05p04440 Brassica napus HOM05D000282 ORTHO05D005428 5.4e-27 123.6 61 96.7
C03p52890 Brassica napus HOM05D005264 ORTHO05D005428 5.4e-27 123.6 66 92.4
A09p24890 Brassica napus HOM05D000282 ORTHO05D005428 7.0e-27 123.2 66 90.9
A09p66890 Brassica napus HOM05D005264 ORTHO05D005428 7.0e-27 123.2 58 98.3
BraA10t43100Z Brassica rapa HOM05D000282 ORTHO05D005428 1.2e-26 122.5 66 90.9
A10p10210 Brassica napus HOM05D000282 ORTHO05D005428 6.6e-25 116.7 62 90.3
BcaB07g33480 Brassica carinata HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
BcaC08g43212 Brassica carinata HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
A06p03250 Brassica napus HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
C06p05380 Brassica napus HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
BolC6t35643H Brassica oleracea HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
BraA06t23536Z Brassica rapa HOM05D005264 ORTHO05D005428 2.4e-19 98.2 56 89.3
Aa31LG10G3950 Aethionema arabicum HOM05D005264 ORTHO05D005428 3.2e-19 97.8 56 87.5
AT1G50300 Arabidopsis thaliana HOM05D005264 ORTHO05D005428 3.2e-19 97.8 56 87.5
Carub.0001s3940 Capsella rubella HOM05D005264 ORTHO05D005428 3.2e-19 97.8 56 87.5
CARHR040350 Cardamine hirsuta HOM05D005264 ORTHO05D005428 3.2e-19 97.8 56 87.5
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 3.2e-19 97.8 56 87.5
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
BcaC01g01222 Brassica carinata HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
A08p03250 Brassica napus HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
BolC3t21270H Brassica oleracea HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
BraA08t32358Z Brassica rapa HOM05D005264 ORTHO05D005428 5.4e-19 97.1 56 87.5
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 7.0e-19 96.7 56 85.7
Thhalv10011982m.g Eutrema salsugineum HOM05D005264 ORTHO05D005428 7.0e-19 96.7 56 85.7
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 1.0e-17 92.8 56 78.6
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 2.3e-17 91.7 56 78.6
Potri.008G085400 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.3e-17 91.7 56 80.4
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 2.3e-17 91.7 56 78.6
Lj3g0025490 Lotus japonicus HOM05D005264 ORTHO05D005428 1.1e-16 89.4 56 75.0
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 1.5e-16 89.0 56 75.0
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 1.5e-16 89.0 56 75.0
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 1.5e-16 89.0 56 75.0
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 1.5e-16 89.0 56 75.0
Rhsim09G0072300 Rhododendron simsii HOM05D005264 ORTHO05D005428 1.9e-16 88.6 55 76.4
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 1.9e-16 88.6 56 75.0
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 2.5e-16 88.2 56 76.8
MSTRG.26597 Avicennia marina HOM05D005264 ORTHO05D005428 3.3e-16 87.8 56 73.2
MD16G1000100 Malus domestica HOM05D005264 ORTHO05D005428 7.3e-16 86.7 56 75.0
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 7.3e-16 86.7 56 75.0
ECA246G0499 Erigeron canadensis HOM05D005264 ORTHO05D005428 1.2e-15 85.9 56 75.0
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 1.2e-15 85.9 56 75.0
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 1.6e-15 85.5 56 75.0
Lsat_1_v5_gn_9_89240 Lactuca sativa HOM05D005264 ORTHO05D005428 2.1e-15 85.1 60 71.7
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 4.7e-15 84.0 56 73.2
Haze_11731 Corylus avellana HOM05D005264 ORTHO05D005428 6.2e-15 83.6 55 74.5
Ah.01g001700 Amaranthus hybridus HOM05D005264 ORTHO05D005428 1.4e-14 82.4 56 75.0
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 1.8e-14 82.0 56 71.4
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.3e-14 81.6 48 77.1
Gohir.D01G138800 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.1e-14 81.3 56 67.9
Gorai.002G167100 Gossypium raimondii HOM05D005264 ORTHO05D005428 3.1e-14 81.3 56 67.9
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 4.0e-14 80.9 56 73.2
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 4.0e-14 80.9 56 71.4
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 4.0e-14 80.9 56 71.4
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 6.8e-14 80.1 56 69.6
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 8.9e-14 79.7 56 69.6
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 8.9e-14 79.7 56 69.6
Prupe.1G345000 Prunus persica HOM05D005264 ORTHO05D005428 8.9e-14 79.7 56 69.6
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 1.2e-13 79.3 56 67.9
Gohir.A01G146454 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.5e-13 79.0 56 67.9
A03p37140 Brassica napus HOM05D000282 ORTHO05D005428 2.0e-13 78.6 36 94.4
MD13G1008100 Malus domestica HOM05D005264 ORTHO05D005428 2.0e-13 78.6 56 69.6
Pp3c17_960 Physcomitrium patens HOM05D005264 ORTHO05D005428 2.6e-13 78.2 56 69.6
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 3.4e-13 77.8 56 66.1
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 3.4e-13 77.8 56 66.1
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 4.4e-13 77.4 48 72.9
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 5.8e-13 77.0 56 66.1
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 9.8e-13 76.3 56 67.9
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 9.8e-13 76.3 56 67.9
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 9.8e-13 76.3 56 67.9
Gorai.002G167000 Gossypium raimondii HOM05D005264 ORTHO05D005428 1.3e-12 75.9 45 73.3
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.3e-12 75.9 56 67.9
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.7e-12 75.5 56 67.9
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.7e-12 75.5 56 67.9
Gohir.A01G146300 Gossypium hirsutum HOM05D005264 ORTHO05D005428 2.2e-12 75.1 45 73.3
Manes.15G115200 Manihot esculenta HOM05D005264 ORTHO05D005428 2.2e-12 75.1 44 75.0
Lj6C722G15 Lonicera japonica HOM05D005264 ORTHO05D005428 3.7e-12 74.3 56 66.1
Sed0010268 Sechium edule HOM05D005264 ORTHO05D005428 3.7e-12 74.3 42 78.6
ATR0618G090 Amborella trichopoda HOM05D005264 ORTHO05D005428 4.9e-12 73.9 45 73.3
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.9e-12 73.9 56 66.1
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.9e-12 73.9 56 66.1
Eucgr.G02564 Eucalyptus grandis HOM05D005264 ORTHO05D005428 6.4e-12 73.6 43 76.7
HanXRQChr06g0171921 Helianthus annuus HOM05D005264 ORTHO05D005428 6.4e-12 73.6 56 66.1
HanXRQChr17g0540751 Helianthus annuus HOM05D005264 ORTHO05D005428 6.4e-12 73.6 56 66.1
Gohir.D01G138900 Gossypium hirsutum HOM05D005264 ORTHO05D005428 8.3e-12 73.2 45 71.1
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 8.3e-12 73.2 45 73.3
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 8.3e-12 73.2 45 73.3
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.1e-11 72.8 45 73.3
Nitab4.5_0002113g0070 Nicotiana tabacum HOM05D005264 ORTHO05D005428 1.1e-11 72.8 45 73.3
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 1.1e-11 72.8 45 73.3
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 1.4e-11 72.4 48 66.7
Aqoxy3G04289 Aquilegia oxysepala HOM05D005264 ORTHO05D005428 2.4e-11 71.6 45 71.1
CSS0010634 Camellia sinensis var. sinensis HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
MELO3C009842.2 Cucumis melo HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
CsaV3_3G041120 Cucumis sativus L. HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
Duzib248G0599 Durio zibethinus HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
Migut.J00716 Erythranthe guttata HOM05D005264 ORTHO05D005428 2.4e-11 71.6 42 76.2
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
QL03p043270 Quercus lobata HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
Thecc.02G294900 Theobroma cacao HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
GSVIVG01010206001 Vitis vinifera HOM05D005264 ORTHO05D005428 2.4e-11 71.6 41 78.0
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
C01p30730 Brassica napus HOM05D000282 ORTHO05D000272 4.1e-11 70.9 33 93.9
CAN.G624.19 Capsicum annuum HOM05D005264 ORTHO05D005428 4.1e-11 70.9 45 71.1
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 4.1e-11 70.9 45 73.3
Glyma.11G103900 Glycine max HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
Glyma.12G028800 Glycine max HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
Solyc11g040050.3 Solanum lycopersicum HOM05D005264 ORTHO05D005428 4.1e-11 70.9 45 71.1
Sopen11g017230 Solanum pennellii HOM05D005264 ORTHO05D005428 4.1e-11 70.9 45 71.1
PGSC0003DMG400018999 Solanum tuberosum HOM05D005264 ORTHO05D005428 4.1e-11 70.9 45 71.1
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 4.1e-11 70.9 56 62.5
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 5.4e-11 70.5 42 73.8
Oeu058145.2 Olea europaea HOM05D005264 ORTHO05D005428 5.4e-11 70.5 41 75.6
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 9.2e-11 69.7 42 73.8
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 1.2e-10 69.3 41 75.6
Actinidia04317 Actinidia chinensis HOM05D005264 ORTHO05D005428 1.2e-10 69.3 41 78.0
Dinv03019 Davidia involucrata HOM05D005264 ORTHO05D005428 1.2e-10 69.3 41 75.6
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.2e-10 69.3 41 75.6
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.0e-10 68.6 54 64.8
Hma1.2p1_0285F.1_g113900 Hydrangea macrophylla HOM05D005264 ORTHO05D005428 4.6e-10 67.4 56 60.7
HanXRQChr03g0087681 Helianthus annuus HOM05D005264 ORTHO05D005428 1.0e-09 66.2 50 62.0
Gorai.009G406700 Gossypium raimondii HOM05D005264 ORTHO05D005428 1.8e-06 55.5 27 74.1
Gohir.D04G103133 Gossypium hirsutum HOM05D005264 ORTHO05D005428 4.0e-06 54.3 27 74.1
Glyma.01G117401 Glycine max HOM05D005264 ORTHO05D005428 8.9e-06 53.1 27 74.1
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 8.9e-06 53.1 27 77.8


User provided reference genes

Program Settings