Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p55410 Brassica napus HOM05D000278 ORTHO05D018740 1.9e-69 265.8 139 100.0
BraA08t32545Z Brassica rapa HOM05D000278 ORTHO05D018740 1.9e-69 265.8 139 100.0
A04p31600 Brassica napus HOM05D000278 ORTHO05D018740 9.4e-69 263.5 139 99.3
BraA04t18617Z Brassica rapa HOM05D000278 ORTHO05D018740 1.7e-65 252.7 142 95.8
A02p43000 Brassica napus HOM05D000278 ORTHO05D018740 2.5e-37 159.1 82 97.6
BolC3t20149H Brassica oleracea HOM05D000278 ORTHO05D018740 5.8e-26 121.3 119 60.5
BcaC05g30297 Brassica carinata HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
A03p33480 Brassica napus HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
C03p40680 Brassica napus HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
BolC3t16333H Brassica oleracea HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
BraA03t12523Z Brassica rapa HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
Thhalv10020448m.g Eutrema salsugineum HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
Sp3g02930 Schrenkiella parvula HOM05D000278 ORTHO05D004031 8.4e-17 90.9 53 83.0
BcaC09g47768 Brassica carinata HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
BcaNung04528 Brassica carinata HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
A01p41240 Brassica napus HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
BNapus_Darmor_BZH_scaffold_78p00470 Brassica napus HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
BolC1t05791H Brassica oleracea HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
BolC1t05795H Brassica oleracea HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
BraA01t04547Z Brassica rapa HOM05D000278 ORTHO05D004031 1.9e-16 89.7 53 81.1
AL3G13870 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 4.2e-16 88.6 53 81.1
AL6G29410 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 7.1e-16 87.8 53 79.2
THA.LOC104802866 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 7.1e-16 87.8 53 79.2
Aa31LG5G14540 Aethionema arabicum HOM05D000278 ORTHO05D004031 9.3e-16 87.4 53 77.4
AT3G03960 Arabidopsis thaliana HOM05D000278 ORTHO05D004031 9.3e-16 87.4 53 79.2
Carub.0003s0321 Capsella rubella HOM05D000278 ORTHO05D004031 9.3e-16 87.4 53 79.2
CARHR078090 Cardamine hirsuta HOM05D000278 ORTHO05D004031 9.3e-16 87.4 53 79.2
THA.LOC104820734 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 7.8e-15 84.3 53 75.5
BcaC05g29888 Brassica carinata HOM05D000278 ORTHO05D004031 3.9e-14 82.0 53 75.5
C05p63100 Brassica napus HOM05D000278 ORTHO05D004031 3.9e-14 82.0 53 75.5
BolC5t34962H Brassica oleracea HOM05D000278 ORTHO05D004031 3.9e-14 82.0 53 75.5
A05p43400 Brassica napus HOM05D000278 ORTHO05D004031 8.7e-14 80.9 53 73.6
Aa31sc26G80 Aethionema arabicum HOM05D000278 ORTHO05D004031 1.1e-13 80.5 51 78.4
BraA05t23080Z Brassica rapa HOM05D000278 ORTHO05D004031 1.1e-13 80.5 53 73.6
Aa31sc46G30 Aethionema arabicum HOM05D000278 ORTHO05D004031 5.6e-13 78.2 47 76.6
Atru.chr2.1362 Acer truncatum HOM05D000278 ORTHO05D004031 2.1e-12 76.3 53 69.8
BcaC05g30238 Brassica carinata HOM05D000278 ORTHO05D004031 2.8e-12 75.9 43 83.7
ATR0697G160 Amborella trichopoda HOM05D000278 ORTHO05D004031 3.6e-12 75.5 53 67.9
CANSAT25G3570 Cannabis sativa HOM05D000278 ORTHO05D004031 3.6e-12 75.5 53 67.9
vmacro12568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004031 3.6e-12 75.5 52 67.3
CSS0000727 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
CSS0002970 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
CSS0033021 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
CSS0036387 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Ciclev10019583m.g Citrus clementina HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
DCAR_019879 Daucus carota HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Dinv37012 Davidia involucrata HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Duzib106G1656 Durio zibethinus HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Duzib177G1081 Durio zibethinus HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gohir.A11G258900 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gohir.A11G296700 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gohir.D11G269000 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gohir.D11G310200 Gossypium hirsutum HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gorai.007G288800 Gossypium raimondii HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Gorai.007G343600 Gossypium raimondii HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Manes.09G141800 Manihot esculenta HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Thecc.05G294000 Theobroma cacao HOM05D000278 ORTHO05D004031 4.8e-12 75.1 53 67.9
Aqoxy2G00582 Aquilegia oxysepala HOM05D000278 ORTHO05D004031 6.2e-12 74.7 56 66.1
Cpa.g.sc51.110 Carica papaya HOM05D000278 ORTHO05D004031 6.2e-12 74.7 53 67.9
Cc06_g22900 Coffea canephora HOM05D000278 ORTHO05D004031 6.2e-12 74.7 53 69.8
Lj1A1137T80 Lonicera japonica HOM05D000278 ORTHO05D004031 6.2e-12 74.7 53 67.9
Manes.08G143700 Manihot esculenta HOM05D000278 ORTHO05D004031 6.2e-12 74.7 53 66.0
TPR.G36870 Trifolium pratense HOM05D000278 ORTHO05D004031 6.2e-12 74.7 53 66.0
CiPaw.06G089700 Carya illinoinensis HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
CiPaw.09G001600 Carya illinoinensis HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
Psat0s3407g0040 Pisum sativum HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
QL07p019694 Quercus lobata HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
Rhsim01G0190500 Rhododendron simsii HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
Rhsim03G0001500 Rhododendron simsii HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 66.0
SalBow1G8202 Salvia bowleyana HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 67.9
SalBow8G1634 Salvia bowleyana HOM05D000278 ORTHO05D004031 8.1e-12 74.3 53 67.9
Peaxi162Scf00071g00913 Petunia axillaris HOM05D000278 ORTHO05D004031 1.1e-11 73.9 53 66.0
Potri.019G034200 Populus trichocarpa HOM05D000278 ORTHO05D004031 1.1e-11 73.9 53 66.0
Prupe.3G113600 Prunus persica HOM05D000278 ORTHO05D004031 1.1e-11 73.9 53 66.0
GSVIVG01033394001 Vitis vinifera HOM05D000278 ORTHO05D004031 1.1e-11 73.9 53 66.0
MSTRG.26066 Avicennia marina HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
CDE01G0608 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
CDE05G1661 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
COL.COLO4_13606 Corchorus olitorius HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
Migut.C00324 Erythranthe guttata HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
Migut.J01891 Erythranthe guttata HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
HanXRQChr08g0227471 Helianthus annuus HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 64.2
Hma1.2p1_1145F.1_g261380 Hydrangea macrophylla HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
Nitab4.5_0002187g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 66.0
Os03g0804800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 64.2
QL07p030356 Quercus lobata HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 64.2
QL07p030735 Quercus lobata HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 64.2
Sc13g0002700 Simmondsia chinensis HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 67.9
VMungo0464G1078 Vigna mungo HOM05D000278 ORTHO05D004031 1.4e-11 73.6 53 64.2
Ah.13g075330 Amaranthus hybridus HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 66.0
Ca_04492_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Ca_25711_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Eucgr.A02095 Eucalyptus grandis HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 1.8e-11 73.2 62 58.1
Lj8A582T9 Lonicera japonica HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 66.0
Medtr6g032870 Medicago truncatula HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Nn7g35821 Nelumbo nucifera HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Psat0s2522g0160 Pisum sativum HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
Hund24837 Selenicereus undatus HOM05D000278 ORTHO05D004031 1.8e-11 73.2 59 59.3
TPR.G34618 Trifolium pratense HOM05D000278 ORTHO05D004031 1.8e-11 73.2 53 64.2
MSTRG.10861 Avicennia marina HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
EL10Ac5g12659 Beta vulgaris HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 67.9
Cfa016437 Carpinus fangiana HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
Haze_19414 Corylus avellana HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
Dinv14581 Davidia involucrata HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 66.0
FvH4_6g27660 Fragaria vesca HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
FAN02G2614 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
FAN05G2827 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
FAN09G2390 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
FAN14G1825 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
MD17G1264300 Malus domestica HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
Medtr1g030650 Medicago truncatula HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
RcHm_v2.0_Chr2g0130701 Rosa chinensis HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
Sabra13G0052100 Salix brachista HOM05D000278 ORTHO05D004031 2.4e-11 72.8 53 64.2
Sed0026355 Sechium edule HOM05D000278 ORTHO05D004031 2.4e-11 72.8 56 64.3
Actinidia30554 Actinidia chinensis HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 66.0
EL10Ac3g06816 Beta vulgaris HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 67.9
Glyma.02G071900 Glycine max HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 64.2
Glyma.16G153200 Glycine max HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 64.2
Lsat_1_v5_gn_4_42920 Lactuca sativa HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 62.3
Lsat_1_v5_gn_5_93080 Lactuca sativa HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 62.3
Phvul.004G079800 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 64.2
Potri.013G058500 Populus trichocarpa HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 62.3
Prupe.3G114000 Prunus persica HOM05D000278 ORTHO05D004031 3.1e-11 72.4 53 64.2
Cc02_g37620 Coffea canephora HOM05D000278 ORTHO05D004031 4.0e-11 72.0 53 64.2
BcaB07g32161 Brassica carinata HOM05D000142 ORTHO05D018740 5.3e-11 71.6 66 63.6
AUR62032687 Chenopodium quinoa HOM05D000278 ORTHO05D004031 5.3e-11 71.6 48 70.8
Lalb_Chr21g0316131 Lupinus albus HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 62.3
Lalb_Chr21g0316151 Lupinus albus HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 62.3
MD09G1235600 Malus domestica HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
Nitab4.5_0006695g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
Peaxi162Scf01108g00120 Petunia axillaris HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
Sabra19G0042100 Salix brachista HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
Solyc01g088080.3 Solanum lycopersicum HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
Sopen01g034950 Solanum pennellii HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
PGSC0003DMG400006829 Solanum tuberosum HOM05D000278 ORTHO05D004031 5.3e-11 71.6 53 64.2
HPP92_017517 Vanilla planifolia HOM05D000278 ORTHO05D004031 5.3e-11 71.6 56 60.7
AUR62032060 Chenopodium quinoa HOM05D000278 ORTHO05D004031 6.9e-11 71.2 48 68.8
MD17G1264600 Malus domestica HOM05D000278 ORTHO05D004031 6.9e-11 71.2 53 62.3
Sp4g19540 Schrenkiella parvula HOM05D000142 ORTHO05D001253 6.9e-11 71.2 66 63.6
ECA232G4643 Erigeron canadensis HOM05D000278 ORTHO05D004031 9.0e-11 70.9 53 62.3
Lj1g0028009 Lotus japonicus HOM05D000278 ORTHO05D004031 9.0e-11 70.9 53 62.3
PSO339G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 9.0e-11 70.9 53 64.2
PSO384G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 9.0e-11 70.9 53 64.2
Hund19239 Selenicereus undatus HOM05D000278 ORTHO05D004031 9.0e-11 70.9 48 70.8
TAR623G0935 Trochodendron aralioides HOM05D000278 ORTHO05D004031 1.5e-10 70.1 53 58.5
unitig_899.g15071 Utricularia gibba HOM05D000861 ORTHO05D004031 1.5e-10 70.1 53 64.2
PGR142G1170 Punica granatum HOM05D000278 ORTHO05D004031 2.0e-10 69.7 53 60.4
TWI34G1951 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 2.0e-10 69.7 53 62.3
ClCG10G013350 Citrullus lanatus HOM05D000278 ORTHO05D004031 2.6e-10 69.3 53 62.3
Cc02_g37670 Coffea canephora HOM05D000278 ORTHO05D004031 3.4e-10 68.9 53 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3360 Anthoceros agrestis HOM05D000278 ORTHO05D004031 5.8e-10 68.2 51 60.8
MELO3C026888.2 Cucumis melo HOM05D000278 ORTHO05D004031 5.8e-10 68.2 53 62.3
CsaV3_3G043280 Cucumis sativus L. HOM05D000278 ORTHO05D004031 5.8e-10 68.2 53 62.3
Sed0013215 Sechium edule HOM05D000278 ORTHO05D004031 5.8e-10 68.2 48 68.8
TWI32G0619 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 5.8e-10 68.2 53 62.3
Thhalv10017023m.g Eutrema salsugineum HOM05D000142 ORTHO05D001253 9.9e-10 67.4 66 60.6
CAN.G410.8 Capsicum annuum HOM05D000278 ORTHO05D004031 1.3e-09 67.0 53 62.3
Pp3c15_13410 Physcomitrium patens HOM05D000278 ORTHO05D004031 1.3e-09 67.0 51 64.7
Pp3c15_13420 Physcomitrium patens HOM05D000278 ORTHO05D004031 1.3e-09 67.0 51 64.7
Lsat_1_v5_gn_3_59580 Lactuca sativa HOM05D000278 ORTHO05D004031 1.7e-09 66.6 53 54.7
SGA_v2.0_scaffold274G46518 Striga asiatica HOM05D000278 ORTHO05D004031 1.7e-09 66.6 65 55.4
Aa31LG5G22550 Aethionema arabicum HOM05D000142 ORTHO05D001253 2.2e-09 66.2 66 57.6
CBR_g26488 Chara braunii HOM05D000278 ORTHO05D004031 2.2e-09 66.2 51 58.8
Actinidia22085 Actinidia chinensis HOM05D000278 ORTHO05D004031 3.8e-09 65.5 53 60.4
SMO353G0351 Selaginella moellendorffii HOM05D000278 ORTHO05D004031 3.8e-09 65.5 51 58.8
Lsat_1_v5_gn_6_85040 Lactuca sativa HOM05D000278 ORTHO05D004031 8.4e-09 64.3 53 54.7
Mapoly0052s0054 Marchantia polymorpha HOM05D000278 ORTHO05D004031 1.1e-08 63.9 56 53.6
BraA04t18322Z Brassica rapa HOM05D000142 ORTHO05D001253 1.4e-08 63.5 49 69.4
A03p20540 Brassica napus HOM05D000142 ORTHO05D001253 3.2e-08 62.4 45 71.1
BraA03t11297Z Brassica rapa HOM05D000142 ORTHO05D001253 3.2e-08 62.4 45 71.1
Carub.0004s1912 Capsella rubella HOM05D000142 ORTHO05D001253 7.1e-08 61.2 69 53.6
AL4G33590 Arabidopsis lyrata HOM05D000142 ORTHO05D001253 1.2e-07 60.5 43 72.1
A04p28430 Brassica napus HOM05D000142 ORTHO05D001253 1.2e-07 60.5 41 75.6
BolC4t28076H Brassica oleracea HOM05D000142 ORTHO05D001253 1.6e-07 60.1 49 63.3
CARHR132370 Cardamine hirsuta HOM05D000142 ORTHO05D001253 1.6e-07 60.1 43 72.1
C04p65740 Brassica napus HOM05D000142 ORTHO05D001253 2.1e-07 59.7 41 75.6
Cre03.g168450 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004031 2.7e-07 59.3 51 49.0
Aa31sc19G80 Aethionema arabicum HOM05D000278 ORTHO05D004031 4.6e-07 58.5 32 84.4
Rhsim03G0008300 Rhododendron simsii HOM05D000278 ORTHO05D004031 6.0e-07 58.2 51 54.9
AT2G37220 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 7.9e-07 57.8 43 69.8
C03p24140 Brassica napus HOM05D000142 ORTHO05D001253 7.9e-07 57.8 66 56.1
BolC3t14807H Brassica oleracea HOM05D000142 ORTHO05D001253 7.9e-07 57.8 66 56.1
Lsat_1_v5_gn_3_135221 Lactuca sativa HOM05D000278 ORTHO05D004031 7.9e-07 57.8 45 60.0
BcaNung06608 Brassica carinata HOM05D000142 ORTHO05D001253 1.3e-06 57.0 66 53.0
CSS0030797 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.9e-06 55.5 85 41.2
Aa31LG10G8640 Aethionema arabicum HOM05D000142 ORTHO05D001253 6.6e-06 54.7 35 71.4
Carub.0005s2003 Capsella rubella HOM05D000142 ORTHO05D001253 8.7e-06 54.3 33 78.8


User provided reference genes

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