Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.1e-284 982.6 501 100.0
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 1.3e-282 975.7 501 99.2
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 4.3e-265 917.5 501 94.2
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 4.3e-265 917.5 501 94.2
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 3.9e-258 894.4 504 90.5
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 5.7e-257 890.6 504 90.1
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.1e-255 886.3 504 89.5
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 2.0e-254 882.1 512 89.3
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 8.5e-253 876.7 507 88.4
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 6.7e-250 867.1 503 86.9
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 9.7e-249 863.2 512 87.1
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 2.0e-246 855.5 512 86.1
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 1.1e-244 849.7 512 85.7
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 9.4e-228 793.5 501 84.2
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 4.4e-225 784.6 515 78.8
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 8.9e-210 733.8 516 72.9
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 8.1e-195 684.1 458 75.1
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.8e-194 682.9 458 75.1
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 2.0e-193 679.5 458 74.9
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 1.4e-191 673.3 450 72.9
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 2.4e-191 672.5 466 72.7
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 3.2e-191 672.2 444 73.2
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 7.1e-191 671.0 444 72.7
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 9.2e-191 670.6 436 75.7
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.6e-190 669.8 444 73.0
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.0e-189 667.2 461 74.2
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 1.3e-189 666.8 431 75.4
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.7e-189 666.4 443 72.9
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.1e-188 663.7 451 73.2
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.5e-188 662.5 503 67.4
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 3.3e-188 662.1 444 72.7
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 9.5e-188 660.6 450 73.6
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.2e-187 660.2 444 72.3
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.2e-187 660.2 503 68.2
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 4.7e-187 658.3 498 69.5
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 3.1e-186 655.6 476 70.8
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 5.2e-186 654.8 495 68.7
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 6.8e-186 654.4 537 65.2
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 6.8e-186 654.4 509 66.6
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 1.5e-185 653.3 437 74.8
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.5e-185 653.3 478 70.7
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 4.4e-185 651.7 497 67.6
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 4.4e-185 651.7 489 69.5
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 4.4e-185 651.7 431 74.2
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 7.6e-185 651.0 438 73.5
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 9.9e-185 650.6 490 68.0
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.9e-185 650.6 456 70.4
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 9.9e-185 650.6 468 70.1
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 1.3e-184 650.2 440 73.6
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.7e-184 649.8 451 72.7
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.7e-184 649.8 451 72.7
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 1.7e-184 649.8 472 69.9
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 2.2e-184 649.4 450 71.3
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.2e-184 649.4 442 72.6
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 2.2e-184 649.4 439 73.3
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 2.9e-184 649.0 468 69.9
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 4.9e-184 648.3 442 72.4
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 8.4e-184 647.5 453 72.6
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 2.4e-183 646.0 461 72.0
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 2.4e-183 646.0 429 75.1
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 9.2e-183 644.0 493 68.0
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.2e-183 644.0 444 71.4
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 9.2e-183 644.0 462 70.1
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 9.2e-183 644.0 471 70.7
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.6e-182 643.3 428 74.1
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.7e-182 642.5 510 65.7
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 2.7e-182 642.5 511 66.5
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 7.8e-182 641.0 458 70.5
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 7.8e-182 641.0 460 69.8
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.3e-181 640.2 427 76.1
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.3e-181 640.2 447 71.4
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.7e-181 639.8 498 66.7
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 3.0e-181 639.0 513 66.3
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 5.1e-181 638.3 494 68.0
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 6.6e-181 637.9 428 73.6
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 6.6e-181 637.9 463 69.5
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.5e-180 636.7 502 65.7
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 3.3e-180 635.6 460 70.2
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 3.3e-180 635.6 515 65.8
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 5.6e-180 634.8 467 69.2
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 7.3e-180 634.4 503 66.6
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.6e-179 633.3 497 66.4
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 4.7e-179 631.7 437 71.4
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 4.7e-179 631.7 471 69.2
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 8.1e-179 630.9 442 70.6
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 8.1e-179 630.9 424 73.3
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 4.0e-178 628.6 443 70.7
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.0e-178 628.6 435 71.7
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.0e-177 626.3 437 73.0
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 1.7e-176 623.2 433 70.7
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.2e-176 622.9 435 71.0
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 2.9e-176 622.5 477 67.3
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.8e-176 622.1 461 68.1
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 6.4e-176 621.3 439 71.1
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 8.4e-176 620.9 438 71.5
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 7.8e-174 614.4 442 69.0
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.3e-173 612.8 443 68.6
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.3e-171 607.1 502 62.4
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 4.8e-171 605.1 432 71.3
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.4e-170 603.6 456 66.4
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 2.4e-170 602.8 467 66.0
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 3.1e-170 602.4 575 56.5
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 2.6e-169 599.4 443 67.9
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 9.9e-169 597.4 467 66.2
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 1.5e-164 583.6 463 62.2
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 7.4e-164 581.3 453 64.5
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 9.9e-161 570.9 442 66.7
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 4.9e-160 568.5 452 61.9
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 2.5e-159 566.2 437 63.4
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 9.0e-146 521.2 451 58.3
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 3.0e-141 506.1 459 57.5
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.5e-140 503.8 375 66.4
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.2e-137 494.2 314 76.1
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.6e-137 493.0 442 57.7
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 2.1e-134 483.4 500 51.6
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 5.7e-132 475.3 494 54.5
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.1e-130 471.1 446 57.8
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.4e-127 460.7 485 50.3
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.3e-125 453.4 256 91.8
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 2.8e-123 446.4 425 57.2
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 5.5e-111 405.6 455 51.6
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 2.2e-107 393.7 396 58.8
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.6e-97 360.9 233 72.1
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 1.8e-85 320.9 331 59.8
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.0e-84 317.4 228 75.9
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.4e-82 310.5 424 39.6
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 3.3e-79 300.1 385 48.1
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 9.5e-79 298.5 226 64.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.5e-60 238.0 457 33.7
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 2.0e-60 237.7 174 67.2
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 7.6e-60 235.7 428 34.3
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.0e-57 226.1 170 68.2
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 3.1e-53 213.8 387 37.7
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 1.7e-43 181.4 132 74.2
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.2e-42 176.8 118 72.0
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.4e-29 134.4 96 63.5
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.0e-24 119.0 92 67.4
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.3e-24 117.9 108 62.0
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.1e-23 115.5 81 66.7
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 3.7e-22 110.5 66 80.3
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 6.5e-19 99.8 57 82.5
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 1.4e-18 98.6 73 80.8
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 2.1e-17 94.7 72 61.1
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 2.0e-15 88.2 49 85.7
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 2.0e-15 88.2 49 85.7
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 2.6e-15 87.8 86 54.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-13 82.0 64 60.9


User provided reference genes

Program Settings