Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-212 741.9 380 100.0
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.5e-212 741.9 380 100.0
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 1.2e-201 706.4 380 96.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 4.1e-199 698.0 380 95.3
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-199 698.0 380 95.3
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 2.2e-197 692.2 382 95.3
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-195 685.6 382 93.2
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.6e-195 684.9 382 92.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 6.8e-194 680.6 384 92.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.4e-193 678.3 382 91.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 2.8e-192 675.2 385 91.7
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 2.8e-192 675.2 385 91.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-191 672.9 385 91.4
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.1e-191 671.8 385 91.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.3e-189 666.4 385 90.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 5.5e-188 661.0 385 89.1
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.7e-187 657.9 385 88.6
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 6.1e-187 657.5 385 87.5
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 8.0e-187 657.1 385 88.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.3e-186 655.6 385 89.6
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 6.8e-178 627.5 385 86.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 6.8e-178 627.5 382 86.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.3e-170 602.4 383 82.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 6.0e-158 561.2 366 79.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.9e-156 556.2 388 77.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.5e-153 546.6 354 79.4
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.6e-153 545.8 356 78.9
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.4e-153 545.4 353 79.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.4e-153 545.4 356 79.2
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 7.6e-153 544.3 367 77.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 7.6e-153 544.3 375 77.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 9.9e-153 543.9 350 80.9
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 3.8e-152 542.0 356 79.8
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.9e-152 541.6 358 77.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.4e-151 540.0 353 79.0
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.4e-151 540.0 350 80.6
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-151 539.7 350 79.7
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-151 539.7 350 79.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.4e-151 539.3 350 79.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 5.4e-151 538.1 357 76.5
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.2e-150 537.0 368 76.4
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.7e-150 535.8 352 79.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.7e-150 535.8 353 79.0
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.5e-150 535.4 353 79.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.6e-150 535.0 363 76.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.0e-150 534.6 368 76.1
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 7.8e-150 534.3 365 77.5
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 7.8e-150 534.3 356 78.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 7.8e-150 534.3 355 77.5
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-149 533.5 348 80.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.7e-149 533.1 368 76.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.1e-149 531.6 357 77.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 5.1e-149 531.6 355 77.7
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.6e-149 531.2 366 75.7
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.1e-148 530.4 363 76.6
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.5e-148 530.0 372 73.9
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.5e-148 530.0 377 74.8
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-148 529.6 363 76.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 3.3e-148 528.9 327 82.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 3.3e-148 528.9 355 77.2
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.3e-148 528.5 350 78.6
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 4.3e-148 528.5 324 81.5
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 7.3e-148 527.7 352 77.0
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 9.6e-148 527.3 383 72.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 9.6e-148 527.3 324 82.1
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.2e-147 526.9 354 76.6
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 1.2e-147 526.9 355 77.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.2e-147 526.9 327 81.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.1e-147 526.2 357 77.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.1e-147 526.2 353 76.2
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.1e-147 526.2 355 78.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.1e-147 526.2 351 77.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.8e-147 525.8 352 77.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.6e-147 525.4 348 80.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 4.7e-147 525.0 363 75.5
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-146 523.9 339 79.1
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.1e-146 523.9 355 76.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.1e-146 523.9 348 78.4
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.4e-146 523.5 340 80.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.8e-146 523.1 352 76.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.8e-146 523.1 352 76.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.4e-146 522.7 352 77.8
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 2.4e-146 522.7 351 76.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.4e-146 522.7 324 81.2
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.4e-146 522.7 355 76.3
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 3.1e-146 522.3 361 75.9
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.1e-146 522.3 361 75.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.1e-146 522.3 376 73.9
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 4.0e-146 521.9 329 80.2
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 5.2e-146 521.5 357 75.9
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.2e-146 521.5 355 75.8
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.5e-145 520.0 357 75.4
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.0e-145 519.6 343 78.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.4e-145 518.5 324 79.6
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.8e-145 518.1 357 76.2
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 7.6e-145 517.7 328 80.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.2e-144 516.2 341 76.5
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.9e-144 515.8 352 77.0
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.8e-144 515.4 356 76.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.9e-143 513.1 348 75.9
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.9e-143 513.1 384 71.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.9e-143 513.1 369 73.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.4e-143 512.7 355 75.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.4e-143 512.7 355 73.5
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-143 512.3 360 75.6
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.4e-143 511.5 358 75.4
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.4e-143 511.5 358 75.4
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 5.4e-143 511.5 370 73.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 2.1e-142 509.6 360 75.6
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.5e-142 508.8 350 76.0
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-141 507.3 347 74.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.0e-141 507.3 349 77.1
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-141 506.9 301 83.7
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 8.7e-141 504.2 326 78.8
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.1e-140 503.8 323 78.6
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.3e-140 502.3 317 80.4
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 4.3e-140 501.9 298 84.2
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 5.6e-140 501.5 351 74.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 8.1e-139 497.7 369 70.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 8.1e-139 497.7 370 72.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.1e-138 497.3 364 71.4
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.0e-138 495.4 351 74.1
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 5.3e-138 495.0 432 63.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.0e-137 493.0 382 68.6
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 2.0e-137 493.0 350 72.6
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.0e-137 493.0 350 72.9
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.4e-137 492.3 361 72.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.6e-137 491.1 321 78.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 7.6e-137 491.1 335 75.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.3e-136 490.3 347 76.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.4e-136 488.0 286 86.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 3.2e-135 485.7 352 73.0
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.6e-134 483.4 437 62.2
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 6.0e-134 481.5 286 83.6
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 6.0e-134 481.5 321 76.3
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 7.9e-134 481.1 323 76.5
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 5.6e-132 474.9 336 72.9
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 3.4e-129 465.7 299 78.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.5e-129 465.3 335 71.3
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.3e-128 463.8 287 82.2
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.2e-128 463.0 332 73.8
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.4e-128 461.5 321 73.2
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-127 460.7 321 72.6
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 3.2e-127 459.1 348 69.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 7.1e-127 458.0 338 70.1
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.5e-126 455.7 299 76.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-119 433.7 333 70.0
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 6.5e-112 408.3 311 67.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.8e-106 390.2 322 63.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.3e-104 384.0 250 79.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 3.0e-101 372.9 260 76.9
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.6e-100 369.8 268 75.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.3e-93 346.7 290 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 4.1e-90 335.9 228 77.2
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 5.9e-73 278.9 310 53.9
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.2e-70 271.2 308 51.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-66 256.1 167 79.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.7e-65 253.4 194 70.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 8.9e-61 238.4 225 65.8
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.2e-60 238.0 205 62.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.6e-57 227.6 225 63.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.6e-57 227.6 225 63.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.3e-48 197.2 112 81.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.2e-42 176.8 113 79.6
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.0e-40 171.8 104 83.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 6.6e-40 169.1 102 85.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 6.6e-40 169.1 102 85.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 4.3e-39 166.4 102 84.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.6e-38 163.3 106 80.2
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.8e-37 161.0 98 83.7
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.2e-36 158.3 107 75.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.7e-35 154.5 106 75.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.3e-31 140.2 284 34.9
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.3e-22 111.7 64 85.9
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.0e-16 92.0 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.8e-16 91.3 49 91.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.0e-13 80.1 61 70.5
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.0e-11 75.5 38 92.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-10 72.0 38 89.5


User provided reference genes

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