Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 2.9e-185 651.7 332 100.0
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 2.9e-185 651.7 332 100.0
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-167 593.2 341 90.6
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 1.2e-167 593.2 341 90.6
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 2.0e-165 585.9 341 89.7
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 5.3e-86 322.0 363 55.1
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.9e-83 313.5 315 58.7
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.1e-78 295.8 365 53.2
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-75 287.3 355 51.5
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.5e-67 260.0 348 49.1
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 1.0e-52 211.5 271 49.4
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.7e-45 186.8 272 48.2
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 6.0e-45 185.7 301 43.2
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.7e-44 184.1 273 46.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.9e-44 183.0 266 45.5
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-43 181.0 277 48.0
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 8.1e-42 175.3 341 38.1
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-41 174.5 218 50.9
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.0e-41 172.9 271 47.2
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 6.8e-41 172.2 271 46.5
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 8.9e-41 171.8 390 37.4
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 2.0e-40 170.6 363 37.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 3.4e-40 169.9 346 38.2
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 5.8e-40 169.1 342 38.3
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 7.5e-40 168.7 329 40.7
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-39 167.5 199 52.3
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.9e-39 166.8 373 38.1
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.9e-39 166.0 268 45.5
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 4.9e-39 166.0 360 39.2
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-38 164.1 199 50.8
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 1.9e-38 164.1 330 38.2
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 1.9e-38 164.1 350 37.1
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.2e-37 161.4 324 39.2
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-34 151.4 344 36.3
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 4.7e-34 149.4 323 39.3
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.2e-33 146.0 201 47.8
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 2.0e-32 144.1 315 35.6
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 5.8e-32 142.5 344 36.9
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 4.9e-31 139.4 325 36.3
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.4e-31 138.7 201 46.8
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-30 138.3 329 36.5
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 7.1e-30 135.6 270 38.5
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 1.6e-29 134.4 314 34.7
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-27 127.9 203 45.8
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-27 127.9 302 35.4
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.9e-27 127.5 206 44.7
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 3.3e-27 126.7 195 44.1
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 4.3e-27 126.3 255 40.4
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 7.3e-27 125.6 266 38.0
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 6.2e-26 122.5 268 40.7
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 8.1e-26 122.1 298 36.9
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-25 121.7 254 39.8
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 4.0e-25 119.8 188 45.2
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 4.0e-25 119.8 314 34.1
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.9e-25 119.0 165 44.2
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-24 118.2 272 37.9
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-24 118.2 272 37.9
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-24 117.9 209 43.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 7.6e-24 115.5 263 37.3
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 9.9e-24 115.2 263 37.3
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-23 114.4 161 42.9
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.7e-23 114.4 213 38.5
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.2e-23 114.0 199 41.7
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.4e-23 112.1 192 43.2
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.4e-22 109.4 196 41.3
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-22 109.4 200 41.5
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 5.4e-22 109.4 200 41.5
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 5.4e-22 109.4 200 41.5
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 5.4e-22 109.4 155 47.7
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.7e-21 107.1 215 37.7
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.1e-17 95.1 60 81.7
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.6e-16 90.5 316 32.0
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 5.8e-16 89.4 83 59.0
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 6.4e-15 85.9 146 43.2
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.2e-13 81.6 156 37.2
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.3e-12 77.4 156 35.9
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 8.7e-12 75.5 187 31.6
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 8.7e-12 75.5 225 29.8
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.5e-11 73.9 244 30.3
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 4.3e-11 73.2 201 30.3
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.6e-11 72.0 135 40.0
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 2.8e-10 70.5 175 32.0
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.8e-10 70.5 188 35.1
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.8e-10 69.7 95 45.3
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.8e-10 69.7 88 50.0
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 6.2e-10 69.3 215 32.1
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.1e-10 68.9 197 32.5
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.8e-09 67.8 205 33.7
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-09 67.4 215 32.1
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.1e-09 67.0 145 34.5
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 3.1e-09 67.0 214 31.8
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 5.3e-09 66.2 139 33.1
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 6.9e-09 65.9 126 34.1
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 1.5e-08 64.7 251 27.9
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 2.0e-08 64.3 128 32.8
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-08 64.3 206 32.5
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 3.4e-08 63.5 199 24.6
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.8e-08 62.8 206 33.0
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 5.8e-08 62.8 215 31.2
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 5.8e-08 62.8 135 37.8
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 7.6e-08 62.4 201 27.9
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 9.9e-08 62.0 86 45.3
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 9.9e-08 62.0 207 30.9
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 9.9e-08 62.0 185 31.9
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 9.9e-08 62.0 185 31.9
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 9.9e-08 62.0 206 30.6
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.9e-08 62.0 161 30.4
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.7e-07 61.2 99 45.5
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.7e-07 61.2 221 30.8
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.7e-07 61.2 206 30.6
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 1.7e-07 61.2 143 30.8
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 2.9e-07 60.5 235 29.4
Prupe.2G110900 Prunus persica HOM05D000307 ORTHO05D000166 4.9e-07 59.7 191 26.7
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 6.4e-07 59.3 188 30.9
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 6.4e-07 59.3 141 31.9
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 8.4e-07 58.9 217 28.1
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 8.4e-07 58.9 144 29.9
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.1e-06 58.5 178 29.8
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.1e-06 58.5 119 31.9
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 1.4e-06 58.2 160 26.2
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.9e-06 57.8 208 31.7
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.9e-06 57.8 91 41.8
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.9e-06 57.8 143 29.4
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.5e-06 57.4 216 31.5
Lj1C1007T18 Lonicera japonica HOM05D000307 ORTHO05D000166 2.5e-06 57.4 169 27.2
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 2.5e-06 57.4 171 28.7
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 2.5e-06 57.4 160 28.8
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.2e-06 57.0 206 32.0
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 3.2e-06 57.0 201 31.8
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.2e-06 56.6 256 25.8
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 4.2e-06 56.6 146 31.5
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 4.2e-06 56.6 147 29.3
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 7.1e-06 55.8 221 28.5
Medtr6g005440 Medicago truncatula HOM05D008089 ORTHO05D000166 7.1e-06 55.8 157 28.0
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 7.1e-06 55.8 199 26.1
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 7.1e-06 55.8 270 27.0
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 9.3e-06 55.5 257 28.0
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 9.3e-06 55.5 257 28.0


User provided reference genes

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