Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-83 312.8 152 100.0
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.5e-83 312.8 152 100.0
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.5e-83 312.8 152 100.0
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 7.4e-83 310.5 152 99.3
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 6.1e-61 237.7 132 90.2
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 6.1e-61 237.7 132 90.2
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.3e-60 236.5 138 86.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.3e-60 235.7 132 89.4
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.3e-60 235.7 132 89.4
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 2.4e-57 225.7 126 88.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-51 205.7 126 83.3
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.1e-29 132.9 71 90.1
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 7.0e-25 117.9 69 82.6
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 7.3e-14 81.3 48 83.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 1.6e-13 80.1 48 81.2
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 1.6e-13 80.1 48 81.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 1.6e-13 80.1 56 71.4
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 2.1e-13 79.7 48 81.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 2.1e-13 79.7 48 81.2
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 2.1e-13 79.7 48 81.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 2.8e-13 79.3 48 79.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 2.8e-13 79.3 48 81.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 3.6e-13 79.0 48 81.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 8.0e-13 77.8 48 79.2
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 8.0e-13 77.8 41 90.2
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 1.0e-12 77.4 48 77.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 1.8e-12 76.6 48 79.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 8.9e-12 74.3 48 72.9
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 1.5e-11 73.6 66 56.1
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 5.7e-11 71.6 48 70.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 5.7e-11 71.6 48 70.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.5e-11 71.2 48 70.8
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 7.5e-11 71.2 48 72.9
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 9.8e-11 70.9 48 68.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 9.8e-11 70.9 48 68.8
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 9.8e-11 70.9 48 68.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 9.8e-11 70.9 48 68.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 9.8e-11 70.9 48 68.8
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 1.3e-10 70.5 48 70.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 1.3e-10 70.5 48 68.8
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 1.3e-10 70.5 48 68.8
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 1.3e-10 70.5 48 68.8
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 1.3e-10 70.5 48 66.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 2.2e-10 69.7 48 66.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 2.9e-10 69.3 50 68.0
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 2.9e-10 69.3 48 66.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 2.9e-10 69.3 50 68.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 3.7e-10 68.9 48 70.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 4.9e-10 68.6 48 68.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 4.9e-10 68.6 48 68.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 4.9e-10 68.6 48 64.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 6.4e-10 68.2 48 70.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 8.3e-10 67.8 48 68.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 8.3e-10 67.8 48 68.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 8.3e-10 67.8 48 68.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.1e-09 67.4 50 66.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 67.4 48 68.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 1.1e-09 67.4 56 60.7
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 1.4e-09 67.0 48 68.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.8e-09 66.6 48 68.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 1.8e-09 66.6 48 66.7
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 1.8e-09 66.6 48 66.7
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 1.8e-09 66.6 48 64.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.8e-09 66.6 47 66.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 1.8e-09 66.6 48 64.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 2.4e-09 66.2 48 66.7
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.2e-09 65.9 47 68.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 3.2e-09 65.9 48 64.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 3.2e-09 65.9 48 66.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 4.1e-09 65.5 48 64.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 4.1e-09 65.5 48 64.6
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 5.4e-09 65.1 48 64.6
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 5.4e-09 65.1 48 64.6
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 5.4e-09 65.1 48 64.6
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 5.4e-09 65.1 48 64.6
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 7.0e-09 64.7 46 67.4
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 7.0e-09 64.7 46 67.4
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 7.0e-09 64.7 48 64.6
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 7.0e-09 64.7 48 66.7
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 9.2e-09 64.3 60 56.7
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 1.2e-08 63.9 48 62.5
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 1.2e-08 63.9 48 62.5
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 1.2e-08 63.9 56 57.1
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 1.6e-08 63.5 48 62.5
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 1.6e-08 63.5 46 67.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 2.0e-08 63.2 48 62.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 2.0e-08 63.2 47 66.0
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 2.7e-08 62.8 49 69.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 2.7e-08 62.8 50 62.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 2.7e-08 62.8 48 66.7
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 3.5e-08 62.4 46 65.2
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 3.5e-08 62.4 48 64.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 5.9e-08 61.6 47 63.8
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 5.9e-08 61.6 48 62.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 7.8e-08 61.2 48 60.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.0e-07 60.8 45 64.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.0e-07 60.8 45 64.4
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.0e-07 60.8 47 63.8
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-07 60.5 45 64.4
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 1.7e-07 60.1 48 58.3
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 1.7e-07 60.1 48 58.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 2.3e-07 59.7 48 62.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 3.0e-07 59.3 49 63.3
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.6e-07 58.2 47 59.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 8.6e-07 57.8 48 62.5
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.9e-06 56.6 47 59.6
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 2.5e-06 56.2 60 53.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.5e-06 56.2 48 56.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 3.3e-06 55.8 48 58.3
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 3.3e-06 55.8 48 60.4
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 4.3e-06 55.5 46 56.5
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 4.3e-06 55.5 48 58.3
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 5.6e-06 55.1 51 51.0


User provided reference genes

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