Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p10460 Brassica napus HOM05D045410 ORTHO05D041625 1.7e-213 745.7 384 100.0
BraA01t00992Z Brassica rapa HOM05D045410 ORTHO05D041625 6.0e-190 667.5 372 94.4
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 3.7e-22 110.2 169 45.6
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 3.7e-22 110.2 171 46.2
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.2e-20 105.1 150 46.7
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.2e-20 105.1 148 47.3
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 3.4e-20 103.6 148 46.6
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 3.4e-20 103.6 171 44.4
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 5.9e-20 102.8 150 46.7
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 5.9e-20 102.8 148 47.3
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 5.0e-19 99.8 148 44.6
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 5.0e-19 99.8 171 42.7
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 3.2e-18 97.1 150 44.0
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 4.7e-17 93.2 175 40.6
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 7.9e-17 92.4 171 42.1
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 5.7e-15 86.3 171 39.8
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 2.2e-14 84.3 163 38.7
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 8.2e-14 82.4 163 38.0
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.1e-13 82.0 164 38.4
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 2.4e-13 80.9 172 36.0
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 4.1e-13 80.1 172 36.6
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 5.3e-13 79.7 194 36.1
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.3e-13 79.7 158 38.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 5.3e-13 79.7 161 36.6
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 7.0e-13 79.3 161 37.3
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 9.1e-13 79.0 158 38.0
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 9.1e-13 79.0 158 38.0
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 1.6e-12 78.2 168 35.7
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 1.6e-12 78.2 148 37.8
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 2.0e-12 77.8 147 38.1
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 2.6e-12 77.4 135 38.5
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 2.6e-12 77.4 135 38.5
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 3.5e-12 77.0 135 38.5
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 2.9e-11 73.9 135 35.6
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 3.8e-11 73.6 149 35.6
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 5.0e-11 73.2 158 36.7
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 5.0e-11 73.2 158 36.7
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 5.0e-11 73.2 160 35.0
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 5.0e-11 73.2 158 34.8
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 6.5e-11 72.8 158 36.7
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 6.5e-11 72.8 158 36.1
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 8.5e-11 72.4 163 35.0
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 8.5e-11 72.4 163 35.0
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 8.5e-11 72.4 158 34.2
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.1e-10 72.0 145 34.5
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.1e-10 72.0 158 36.1
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 1.9e-10 71.2 158 36.1
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 4.2e-10 70.1 142 35.2
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 9.4e-10 68.9 136 36.8
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.7e-09 67.4 159 36.5
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 3.6e-09 67.0 172 33.7
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 3.6e-09 67.0 135 34.8
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 4.7e-09 66.6 161 35.4
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 6.1e-09 66.2 138 31.9
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 6.1e-09 66.2 149 33.6
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 8.0e-09 65.9 44 68.2
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 8.0e-09 65.9 155 32.9
vmacro10020 Vaccinium macrocarpon HOM05D004863 ORTHO05D005802 1.0e-08 65.5 129 34.9
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.4e-08 65.1 148 33.1
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 1.4e-08 65.1 165 32.1
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.8e-08 64.7 178 32.6
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 2.3e-08 64.3 160 33.8
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 2.3e-08 64.3 159 30.8
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 3.0e-08 63.9 152 32.2
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.0e-08 63.5 158 32.9
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 4.0e-08 63.5 222 29.7
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.6e-07 60.8 151 29.1
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 2.6e-07 60.8 151 29.1
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 2.6e-07 60.8 157 32.5
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 5.7e-07 59.7 209 28.2
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.2e-06 57.8 166 30.7
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 8.2e-06 55.8 59 55.9


User provided reference genes

Program Settings