Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p07480 Brassica napus HOM05D003391 ORTHO05D013251 5.2e-33 143.7 67 100.0
C04p47270 Brassica napus HOM05D003391 ORTHO05D013251 5.2e-33 143.7 67 100.0
BolC4t26326H Brassica oleracea HOM05D003391 ORTHO05D013251 5.2e-33 143.7 67 100.0
C03p10930 Brassica napus HOM05D000705 ORTHO05D013251 3.4e-32 141.0 67 98.5
C09p36290 Brassica napus HOM05D003391 ORTHO05D040219 1.4e-25 119.0 67 83.6
BolC9t56466H Brassica oleracea HOM05D003391 ORTHO05D040219 1.4e-25 119.0 67 83.6
BcaC04g21046 Brassica carinata HOM05D000705 ORTHO05D013251 1.5e-24 115.5 52 100.0
BcaC08g44163 Brassica carinata HOM05D003391 ORTHO05D013251 1.5e-24 115.5 53 98.1
C07p36020 Brassica napus HOM05D003391 ORTHO05D013251 4.5e-24 114.0 52 98.1
BcaB07g33280 Brassica carinata HOM05D000705 ORTHO05D013251 3.2e-22 107.8 52 92.3
A02p35070 Brassica napus HOM05D003391 ORTHO05D013251 4.2e-22 107.5 52 92.3
BcaB06g26412 Brassica carinata HOM05D000705 ORTHO05D013251 4.6e-21 104.0 51 92.2
BcaB04g20116 Brassica carinata HOM05D003391 ORTHO05D013251 1.1e-17 92.8 44 88.6
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 9.0e-17 89.7 46 91.3
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 7.6e-16 86.7 46 89.1
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 7.6e-16 86.7 46 89.1
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 7.6e-16 86.7 46 89.1
BcaB06g26410 Brassica carinata HOM05D000705 ORTHO05D013251 1.7e-15 85.5 42 88.1
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 1.7e-15 85.5 45 86.7
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 3.8e-15 84.3 46 84.8
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 3.8e-15 84.3 46 84.8
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 3.8e-15 84.3 46 84.8
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 4.9e-15 84.0 46 87.0
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 8.4e-15 83.2 46 87.0
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 8.4e-15 83.2 46 87.0
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 8.4e-15 83.2 46 87.0
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 8.4e-15 83.2 46 87.0
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 3.2e-14 81.3 45 82.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 3.2e-14 81.3 45 82.2
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 9.3e-14 79.7 46 84.8
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 7.9e-13 76.6 45 80.0
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 3.0e-12 74.7 64 60.9
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 5.1e-12 73.9 50 70.0
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 6.7e-12 73.6 45 80.0
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 6.7e-12 73.6 45 80.0
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 6.7e-12 73.6 45 80.0
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 8.7e-12 73.2 45 77.8
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.5e-11 72.4 46 73.9
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-11 72.4 46 73.9
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-11 72.4 46 73.9
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.9e-11 72.0 44 77.3
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 4.3e-11 70.9 36 88.9
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 4.3e-11 70.9 46 73.9
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 4.3e-11 70.9 45 68.9
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 4.3e-11 70.9 45 68.9
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 5.6e-11 70.5 36 86.1
BolC2t08516H Brassica oleracea HOM05D000705 ORTHO05D013251 7.4e-11 70.1 38 84.2
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 7.4e-11 70.1 45 75.6
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 7.4e-11 70.1 36 86.1
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 9.6e-11 69.7 64 59.4
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 9.6e-11 69.7 61 57.4
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 9.6e-11 69.7 36 88.9
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 9.6e-11 69.7 46 71.7
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 1.3e-10 69.3 45 75.6
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.3e-10 69.3 45 73.3
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.6e-10 68.9 37 81.1
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 2.1e-10 68.6 46 71.7
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 2.1e-10 68.6 46 71.7
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 2.1e-10 68.6 45 66.7
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.8e-10 68.2 45 71.1
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 3.7e-10 67.8 45 73.3
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 3.7e-10 67.8 45 68.9
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 4.8e-10 67.4 46 69.6
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.2e-10 67.0 45 68.9
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 6.2e-10 67.0 45 71.1
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 6.2e-10 67.0 45 71.1
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 6.2e-10 67.0 45 71.1
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 6.2e-10 67.0 49 69.4
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 8.2e-10 66.6 35 85.7
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.1e-09 66.2 45 68.9
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.4e-09 65.9 46 67.4
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 1.4e-09 65.9 45 68.9
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 1.8e-09 65.5 45 66.7
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.8e-09 65.5 63 52.4
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 2.4e-09 65.1 39 74.4
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 2.4e-09 65.1 45 68.9
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 2.4e-09 65.1 45 68.9
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 2.4e-09 65.1 45 64.4
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.4e-09 65.1 45 71.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 3.1e-09 64.7 45 66.7
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 3.1e-09 64.7 49 67.3
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 3.1e-09 64.7 37 78.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 5.3e-09 63.9 45 71.1
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 5.3e-09 63.9 45 71.1
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 5.3e-09 63.9 45 71.1
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 6.9e-09 63.5 46 63.0
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 6.9e-09 63.5 43 74.4
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 6.9e-09 63.5 63 55.6
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 9.0e-09 63.2 45 66.7
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 9.0e-09 63.2 45 66.7
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.2e-08 62.8 45 68.9
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.2e-08 62.8 46 65.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 1.2e-08 62.8 45 64.4
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.5e-08 62.4 45 66.7
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 1.5e-08 62.4 44 72.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.0e-08 62.0 49 61.2
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 2.0e-08 62.0 45 62.2
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.0e-08 62.0 46 63.0
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 2.6e-08 61.6 59 54.2
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 2.6e-08 61.6 59 54.2
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 3.4e-08 61.2 39 71.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 3.4e-08 61.2 47 59.6
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 4.5e-08 60.8 65 52.3
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 4.5e-08 60.8 45 64.4
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 4.5e-08 60.8 35 82.9
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 5.8e-08 60.5 45 62.2
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 7.6e-08 60.1 45 60.0
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.6e-08 60.1 42 66.7
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 7.6e-08 60.1 42 66.7
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 7.6e-08 60.1 45 66.7
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 7.6e-08 60.1 45 62.2
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 7.6e-08 60.1 35 74.3
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 7.6e-08 60.1 35 74.3
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 7.6e-08 60.1 35 74.3
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 7.6e-08 60.1 33 81.8
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.0e-07 59.7 44 61.4
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 1.3e-07 59.3 35 74.3
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.3e-07 59.3 47 57.4
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 1.3e-07 59.3 42 66.7
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 1.7e-07 58.9 45 57.8
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 1.7e-07 58.9 44 59.1
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 3.8e-07 57.8 42 66.7
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 3.8e-07 57.8 45 57.8
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 4.9e-07 57.4 37 67.6
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.9e-07 57.4 46 63.0
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 4.9e-07 57.4 46 60.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 8.4e-07 56.6 47 53.2
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.4e-06 55.8 45 57.8
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.5e-06 55.1 40 60.0
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 3.2e-06 54.7 34 70.6
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 3.2e-06 54.7 45 62.2
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 3.2e-06 54.7 45 64.4
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.2e-06 54.3 42 61.9
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 4.2e-06 54.3 29 79.3
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 5.5e-06 53.9 37 67.6
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 7.1e-06 53.5 32 71.9


User provided reference genes

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