Anchorpoints

Gene id
AT5G11060
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT5G25220KNOTTED1-like homeobox gene 3 A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS IN: transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to light stimulus, detection of cytokinin stimulus, cellular response to cytokine stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), KNOX2 (InterPro:IPR005541), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 4 (TAIR:AT5G11060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View


Orthologs (inter-species colinear regions)

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G30730No description available.Bd1-View
BD3G06170No description available.Bd3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G08544Homeobox protein knotted-1-like 2 homeobox protein knotted-1, putative, expressed2+View
OS06G43860homeobox protein knotted-1, putative, expressed Homeobox protein knotted-1-like 116-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_06G39660No description available.Chr06-View
OSINDICA_02G08360No description available.Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT18G02270No description available.Chr18+View
PT06G25940No description available.Chr06-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G005620No description available.chr_4+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G20380No description available.scaffold_4+View
SI001G06390No description available.scaffold_1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G12730name=GSVIVG01035921001;chr4+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G21500Homeobox protein knotted-1-like 7 Fragment Homeobox protein knotted-1-like 6 Homeobox protein knotted-1-like 75-View
ZM09G14230Homeobox protein knotted-1-like 2 Homeobox protein knotted-1-like 2 Fragment ;Homeobox protein knotted-1-like 2 Fragment9+View


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Description
Chromosome
Strand