Gene: AT5G25220 (Arabidopsis thaliana)

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Gene Identifier
AT5G25220
Transcript Identifier
AT5G25220.1
Gene Type
Coding gene
Location
5 : 8736208-8738115 : positive

Family

Gene family
HOM03M000310
(181 genes in 16 species)
specific family
Subfamily
ORTHO03M004029
(7 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
KNOTTED1-like homeobox gene 3
Curated Summary
A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia
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Identifiers

Identifier Name
aliasKNOTTED1-like homeobox gene 3
aliasKNAT3
uniprotP48000

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009722IEPUniProtdetection of cytokinin stimulus1 2 3 4
GO:0071345IDAUniProtcellular response to cytokine stimulus1 2 3 4
GO:0048513RCAGene Ontologyorgan development1
GO:0009416IEPUniProtresponse to light stimulus1 2 3 4
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000310

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4
GO:0005515IPIGene Ontologyprotein binding1
GO:0043565IEAUniProtsequence-specific DNA binding1 2 3
GO:0003677IEAInterProDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5
GO:0005829IDAUniProtcytosol1 2 3 4

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005541KNOX2
IPR008422Homeobox KN domain
IPR009057Homeodomain-like
IPR005540KNOX1
IPR001356Homeobox domain
IPR005539ELK

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBHB
PlantTFDBTALE