Gene: SI001G06390 (Setaria italica)

Overview top

Gene Identifier
SI001G06390
Transcript Identifier
SI001G06390.1
Gene Type
Coding gene
Location
scaffold_1 : 5745766-5748568 : negative

Family

Gene family
HOM03M000310
(181 genes in 16 species)
specific family
Subfamily
ORTHO03M004029
(7 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Homeobox protein knotted-1-like
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi020494m
tidSi020494m
idPAC:19687142
GeneNameSi020494m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0009416ISOPLAZA Integrative Orthologyresponse to light stimulusAT5G25220 AT5G11060
GO:0071345ISOPLAZA Integrative Orthologycellular response to cytokine stimulusAT5G25220
GO:0009722ISOPLAZA Integrative Orthologydetection of cytokinin stimulusAT5G25220
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000310

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0043565IEAGenome Projectsequence-specific DNA binding
GO:0003700IEAGenome Projectsequence-specific DNA binding transcription factor activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT5G25220

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G25220 AT5G11060

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR009057Homeodomain-like
IPR001356Homeobox domain
IPR005540KNOX1
IPR005539ELK
IPR008422Homeobox KN domain
IPR005541KNOX2

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.