Anchorpoints
- Gene id
- CS00003G04900
- Organism
- Citrus sinensis
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G17660 | No description available. | scaffold_2 | + | View |
AL1G14690 | No description available. | scaffold_1 | + | View |
AL1G27000 | No description available. | scaffold_1 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G69410 | eukaryotic elongation factor 5A-3 (ELF5A-3); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, translational frameshifting, positive regulation of translational termination, peptidyl-lysine modification to hypusine, positive regulation of translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-1 (TAIR:AT1G13950.1); Has 1331 Blast hits to 1330 proteins in 408 species: Archae - 255; Bacteria - 0; Metazoa - 363; Fungi - 252; Plants - 260; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). eukaryotic elongation factor 5A-3 Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 1 | + | View |
AT1G26630 | Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1331 Blast hits to 1330 proteins in 409 species: Archae - 256; Bacteria - 0; Metazoa - 365; Fungi - 242; Plants - 261; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink). | 1 | + | View |
AT1G13950 | eukaryotic elongation factor 5A-1 Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264; Bacteria - 0; Metazoa - 366; Fungi - 246; Plants - 261; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). | 1 | + | View |
Amborella trichopoda
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ATR_00058G00530 | No description available. | scaffold00058 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G29950 | No description available. | A09 | + | View |
BR07G26180 | No description available. | A07 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV6G01870 | No description available. | Bvchr6.sca028 | + | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G24930 | No description available. | Chr5 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00016G04590 | No description available. | CM3.5_scaffold00016 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00001G00770 | No description available. | supercontig_1 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G15050 | No description available. | scaffold_2 | + | View |
CRU_001G23440 | No description available. | scaffold_1 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0007G19010 | No description available. | scaffold_7 | + | View |
EG0002G04770 | No description available. | scaffold_2 | - | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV0G04730 | Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (similar to) | scf0513158 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM01G06600 | No description available. | Gm01 | - | View |
GM06G21290 | No description available. | Gm06 | - | View |
GM05G00780 | No description available. | Gm05 | + | View |
GM04G32950 | No description available. | Gm04 | + | View |
GM02G12520 | No description available. | Gm02 | - | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR08G19580 | No description available. | Chr08 | - | View |
GR05G14380 | No description available. | Chr05 | + | View |
GR08G17870 | No description available. | Chr08 | + | View |
GR03G09870 | No description available. | Chr03 | - | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ4G029450 | No description available. | chr4 | - | View |
LJ2G021140 | No description available. | chr2 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD16G003380 | No description available. | 16 | + | View |
MD00G250490 | No description available. | MDC010756.328 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME08359G01970 | No description available. | scaffold08359 | + | View |
ME12794G02490 | No description available. | scaffold12794 | - | View |
ME04233G00050 | No description available. | scaffold04233 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT5G042990 | eukaryotic translation initiation factor 5A4 | chr5 | - | View |
MT4G109130 | eukaryotic translation initiation factor 5A4 | chr4 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS07G40580 | eukaryotic translation initiation factor 5A, putative, expressed | 7 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_001G29240 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G16280 | No description available. | Chr10 | + | View |
PT08G09200 | No description available. | Chr08 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30138G01990 | No description available. | 30138 | + | View |
RC30174G05550 | No description available. | 30174 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G115650 | Eukaryotic translation initiation factor 5A-1 Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI)%3B contains Interpro domain(s) IPR001884 Translation elongation factor%2C IF5A | ch03 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G029130 | Eukaryotic translation initiation factor 5A (AHRD V1 **** Q207T7_GYMCO); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A | chr03 | + | View |
ST04G005130 | Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A | chr04 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0002G33700 | No description available. | scaffold_2 | + | View |
TC0003G09760 | No description available. | scaffold_3 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP1G22170 | similar to AT1G26630|FBR12 (FUMONISIN B1-RESISTANT12) | ch1-1 | - | View |
TP5G24460 | similar to AT1G69410|ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) | ch5-6 | + | View |
TP1G12310 | similar to AT1G13950|ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) | ch1-1 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV04G13060 | name=GSVIVG01035958001; | chr4 | + | View |
VV17G03270 | name=GSVIVG01007954001; | chr17 | - | View |