Gene: CRU_001G23440 (Capsella rubella)

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Gene Identifier
CRU_001G23440
Transcript Identifier
CRU_001G23440.1
Gene Type
Coding gene
Location
scaffold_1 : 8774629-8775758 : negative

Family

Gene family
HOM03D001256
(123 genes in 31 species)
specific family
Subfamily
ORTHO03D018316
(8 genes in 7 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Eukaryotic translation initiation factor 5A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10012030m.g
idPAC:20890337

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006452IEAGenome Projecttranslational frameshifting
GO:0045901IEAGenome Projectpositive regulation of translational elongation
GO:0045905IEAGenome Projectpositive regulation of translational termination
GO:0008612IEAGenome Projectpeptidyl-lysine modification to hypusine
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT1G26630
GO:0034050ISOPLAZA Integrative Orthologyhost programmed cell death induced by symbiontAT1G26630
GO:0009617ISOPLAZA Integrative Orthologyresponse to bacteriumAT1G26630
GO:0012501ISOPLAZA Integrative Orthologyprogrammed cell deathAT1G26630
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT1G26630
GO:0006413ISOPLAZA Integrative Orthologytranslational initiationAT1G26630
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT1G26630
GO:0006448IEAPLAZA Homologyregulation of translational elongationHOM03D001256
GO:0006449IEAPLAZA Homologyregulation of translational terminationHOM03D001256
GO:0043624IEAPLAZA Homologycellular protein complex disassemblyHOM03D001256
GO:0042398IEAPLAZA Homologycellular modified amino acid biosynthetic processHOM03D001256
GO:0032268IEAPLAZA Homologyregulation of cellular protein metabolic processHOM03D001256
GO:0032270IEAPLAZA Homologypositive regulation of cellular protein metabolic processHOM03D001256
GO:0046516IEAPLAZA Homologyhypusine metabolic processHOM03D001256
GO:0051130IEAPLAZA Homologypositive regulation of cellular component organizationHOM03D001256
GO:0045727IEAPLAZA Homologypositive regulation of translationHOM03D001256
GO:0006415IEAPLAZA Homologytranslational terminationHOM03D001256
GO:0006417IEAPLAZA Homologyregulation of translationHOM03D001256
GO:0051128IEAPLAZA Homologyregulation of cellular component organizationHOM03D001256
GO:0018205IEAPLAZA Homologypeptidyl-lysine modificationHOM03D001256
GO:0006414IEAPLAZA Homologytranslational elongationHOM03D001256
GO:0051247IEAPLAZA Homologypositive regulation of protein metabolic processHOM03D001256
GO:0051246IEAPLAZA Homologyregulation of protein metabolic processHOM03D001256
GO:0043241IEAPLAZA Homologyprotein complex disassemblyHOM03D001256
GO:0010557IEAPLAZA Homologypositive regulation of macromolecule biosynthetic processHOM03D001256
GO:0009891IEAPLAZA Homologypositive regulation of biosynthetic processHOM03D001256
GO:0009893IEAPLAZA Homologypositive regulation of metabolic processHOM03D001256
GO:0010608IEAPLAZA Homologyposttranscriptional regulation of gene expressionHOM03D001256
GO:0010604IEAPLAZA Homologypositive regulation of macromolecule metabolic processHOM03D001256
GO:0022411IEAPLAZA Homologycellular component disassemblyHOM03D001256
GO:0048518IEAPLAZA Homologypositive regulation of biological processHOM03D001256
GO:0043244IEAPLAZA Homologyregulation of protein complex disassemblyHOM03D001256
GO:0048522IEAPLAZA Homologypositive regulation of cellular processHOM03D001256
GO:0043243IEAPLAZA Homologypositive regulation of protein complex disassemblyHOM03D001256
GO:0018193IEAPLAZA Homologypeptidyl-amino acid modificationHOM03D001256
GO:0031325IEAPLAZA Homologypositive regulation of cellular metabolic processHOM03D001256
GO:0032984IEAPLAZA Homologymacromolecular complex disassemblyHOM03D001256
GO:0031328IEAPLAZA Homologypositive regulation of cellular biosynthetic processHOM03D001256

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IEAGenome ProjectRNA binding
GO:0003746IEAGenome Projecttranslation elongation factor activity
GO:0043022IEAGenome Projectribosome binding
GO:0003743ISOPLAZA Integrative Orthologytranslation initiation factor activityAT1G26630
GO:0043021IEAPLAZA Homologyribonucleoprotein complex bindingHOM03D001256

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G26630

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR008991Translation protein SH3-like domain
IPR020189Translation elongation factor, IF5A C-terminal
IPR012340Nucleic acid-binding, OB-fold
IPR014722Ribosomal protein L2 domain 2
IPR019769Translation elongation factor, IF5A, hypusine site
IPR001884Translation elongation factor IF5A

Mapman id Description
29.2.3protein.synthesis.initiation
No SignalP domains detected for this gene.