PLAZA 3.0 Dicots : colinear gene pairs

Anchorpoints

Gene id: CRU_003G00590
Organism: Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G00670	No description available.	scaffold_3	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G01460	methyl-CPG-binding domain 9 (MBD9); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: photoperiodism, flowering, secondary shoot formation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), DNA-binding, integrase-type (InterPro:IPR016177), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT1G77250.1); Has 6416 Blast hits to 3988 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 4085; Fungi - 602; Plants - 1260; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. methyl-CPG-binding domain 9	3	+	View

Brassica rapa

Gene id	Description	Chromosome	Strand	Multiplicon
BR01G41030	No description available.	A01	-	View
BR05G36200	No description available.	A05	+	View

Citrullus lanatus

Gene id	Description	Chromosome	Strand	Multiplicon
CL10G12460	No description available.	Chr10	-	View

Cucumis melo

Gene id	Description	Chromosome	Strand	Multiplicon
CM00011G08950	No description available.	CM3.5_scaffold00011	+	View

Citrus sinensis

Gene id	Description	Chromosome	Strand	Multiplicon
CS00028G00400	No description available.	scaffold00028	-	View
CS00003G02690	No description available.	scaffold00003	-	View

Eucalyptus grandis

Gene id	Description	Chromosome	Strand	Multiplicon
EG0009G15240	No description available.	scaffold_9	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV0G38610	Lysine-specific demethylase 5B (probable)	scf0513124	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G23910	No description available.	Gm13	-	View
GM19G01310	No description available.	Gm19	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD17G002680	No description available.	17	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT6G007650	methyl-CpG-binding domain protein	chr6	-	View

Prunus persica

Gene id	Description	Chromosome	Strand	Multiplicon
PPE_003G26060	No description available.	scaffold_3	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC0004G00790	No description available.	scaffold_4	+	View

Thellungiella parvula

Gene id	Description	Chromosome	Strand	Multiplicon
TP3G00610	similar to AT3G01460\|MBD9	ch3-1	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G11810	name=GSVIVG01032492001;	chr14	-	View