Gene: AT3G01460 (Arabidopsis thaliana)

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Gene Identifier
AT3G01460
Transcript Identifier
AT3G01460.1
Gene Type
Coding gene
Location
3 : 173316-182038 : positive

Family

Gene family
HOM03D003800
(49 genes in 30 species)
specific family

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Descriptions

Description
methyl-CPG-binding domain 9
Curated Summary
Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.
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Identifiers

Identifier Name
aliasMBD9
aliasmethyl-CPG-binding domain 9
aliasATMBD9
uniprotQ9SGH2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IMPUniProtregulation of transcription, DNA-dependent1 2 3 4 5 6 7
GO:0010223IMPUniProtsecondary shoot formation1 2 3 4 5 6 7
GO:0043966IMPUniProthistone H3 acetylation1 2 3 4 5 6 7
GO:0043967IMPUniProthistone H4 acetylation1 2 3 4 5 6 7
GO:0048573IMPUniProtphotoperiodism, flowering1 2 3 4 5 6 7
GO:0016573IDAGene Ontologyhistone acetylation1
GO:0007155RCAGene Ontologycell adhesion1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0008327ISSUniProtmethyl-CpG binding1 2 3 4 5 6 7
GO:0004402IDAUniProthistone acetyltransferase activity1 2 3 4 5 6 7
GO:0042393IPIGene Ontologyhistone binding1
GO:0005515IEAInterProprotein binding
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5 6 7 8
GO:0009506IDAUniProtplasmodesma1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR019787Zinc finger, PHD-finger
IPR011011Zinc finger, FYVE/PHD-type
IPR003889FY-rich, C-terminal
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001739Methyl-CpG DNA binding
IPR003888FY-rich, N-terminal
IPR001487Bromodomain
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR016177DNA-binding domain

Mapman id Description
27.3.59RNA.regulation of transcription.Methyl binding domain proteins
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD