Gene: CRU_003G00590 (Capsella rubella)

Overview top

Gene Identifier
CRU_003G00590
Transcript Identifier
CRU_003G00590.1
Gene Type
Coding gene
Location
scaffold_3 : 189488-198533 : negative

Family

Gene family
HOM03D003800
(49 genes in 30 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
CpG-binding domain-containing protein 9
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10012794m.g
idPAC:20899373

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016573ISOPLAZA Integrative Orthologyhistone acetylationAT3G01460
GO:0048573ISOPLAZA Integrative Orthologyphotoperiodism, floweringAT3G01460
GO:0043967ISOPLAZA Integrative Orthologyhistone H4 acetylationAT3G01460
GO:0043966ISOPLAZA Integrative Orthologyhistone H3 acetylationAT3G01460
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT3G01460
GO:0010223ISOPLAZA Integrative Orthologysecondary shoot formationAT3G01460

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0003677IEAGenome ProjectDNA binding
GO:0008270IEAInterProzinc ion binding
GO:0042393ISOPLAZA Integrative Orthologyhistone bindingAT3G01460
GO:0004402ISOPLAZA Integrative Orthologyhistone acetyltransferase activityAT3G01460

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT3G01460

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR019787Zinc finger, PHD-finger
IPR003888FY-rich, N-terminal
IPR019786Zinc finger, PHD-type, conserved site
IPR003889FY-rich, C-terminal
IPR001739Methyl-CpG DNA binding
IPR011011Zinc finger, FYVE/PHD-type
IPR001965Zinc finger, PHD-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001487Bromodomain
IPR016177DNA-binding domain

Mapman id Description
27.3.59RNA.regulation of transcription.Methyl binding domain proteins
No SignalP domains detected for this gene.