Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G09570phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink). Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. phytochrome A1-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV3G04210No description available.Bvchr3.sca003+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00009G00510No description available.supercontig_9-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_001G08490No description available.scaffold_1-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00016G01390No description available.scaffold00016+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G39320Phytochrome B (similar to)LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM09G03990No description available.Gm09-View
GM15G14980No description available.Gm15-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR11G20020No description available.Chr11+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G023820No description available.chr6-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME00708G00460No description available.scaffold00708-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_001G11060No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G14590No description available.Chr10+View
PT08G10520No description available.Chr08-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29889G00660No description available.29889+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G30140No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP1G08170similar to AT1G09570|PHYA (PHYTOCHROME A)ch1-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV05G11540name=GSVIVG01034989001;chr5-View


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Gene id
Species
Description
Chromosome
Strand