Gene: FV3G39320 (Fragaria vesca)

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Gene Identifier
FV3G39320
Transcript Identifier
FV3G39320.1
Gene Type
Coding gene
Location
LG3 : 26561240-26579135 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family

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Descriptions

Description
Phytochrome B (similar to)
Description (AnnoMine)
Phytochrome A

Identifiers

Identifier Name
pidgene05117

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0018298IEAInterProprotein-chromophore linkage
GO:0007165IEAInterProsignal transduction
GO:0009584IEAInterProdetection of visible light
GO:0006468IEAInterProprotein phosphorylation
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G18790
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G18790
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT2G18790
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT2G18790
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0005524IEAInterProATP binding
GO:0000155IEAInterProphosphorelay sensor kinase activity
GO:0004672IEAInterProprotein kinase activity
GO:0004674IEAInterProprotein serine/threonine kinase activity
GO:0004871IEAInterProsignal transducer activity
GO:0016772IEAInterProtransferase activity, transferring phosphorus-containing groups
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAInterPromembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G18790
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR003018GAF domain
IPR000719Protein kinase domain
IPR001294Phytochrome
IPR008271Serine/threonine-protein kinase, active site
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013767PAS fold
IPR011009Protein kinase-like domain
IPR001610PAC motif
IPR016132Phytochrome chromophore attachment domain
IPR028324Serine/threonine-protein kinase CTR1/EDR1
IPR013654PAS fold-2
IPR013516Phytochrome chromophore binding site
IPR013515Phytochrome, central region
IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
IPR002290Serine/threonine- / dual specificity protein kinase, catalytic domain
IPR005467Signal transduction histidine kinase, core

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.