Gene: CRU_001G08490 (Capsella rubella)

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Gene Identifier
CRU_001G08490
Transcript Identifier
CRU_001G08490.1
Gene Type
Coding gene
Location
scaffold_1 : 3168531-3172258 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10008141m.g
idPAC:20889052

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0009584IEAGenome Projectdetection of visible light
GO:0018298IEAGenome Projectprotein-chromophore linkage
GO:0007165IEAGenome Projectsignal transduction
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT1G09570
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT1G09570
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT1G09570
GO:0046685ISOPLAZA Integrative Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT1G09570
GO:0017148ISOPLAZA Integrative Orthologynegative regulation of translationAT1G09570
GO:0010201ISOPLAZA Integrative Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0010203ISOPLAZA Integrative Orthologyresponse to very low fluence red light stimulusAT1G09570

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008020IEAGenome ProjectG-protein coupled photoreceptor activity
GO:0000155IEAGenome Projectphosphorelay sensor kinase activity
GO:0005515IEAGenome Projectprotein binding
GO:0005524IEAGenome ProjectATP binding
GO:0004871IEAInterProsignal transducer activity
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT1G09570
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT1G09570
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT1G09570

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAGenome Projectmembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G09570
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT1G09570
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT1G09570

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR001294Phytochrome
IPR000014PAS domain
IPR013515Phytochrome, central region
IPR003018GAF domain
IPR013654PAS fold-2
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR013516Phytochrome chromophore binding site
IPR013767PAS fold
IPR005467Signal transduction histidine kinase, core
IPR016132Phytochrome chromophore attachment domain

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.