PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm16	17	CH_gma_283	3	3	0.000011257
Glycine max	Gm19	17	CH_gma_22	9	18	9.48269e-21
Gossypium raimondii	Chr12	17	CH_gra_73	5	5	0.00000000000208501
Oryza sativa ssp. japonica	10	17	CH_osa_1	30	55	5.27409e-62
Oryza sativa ssp. japonica	11	17	CH_osa_100	6	11	0.00000000246342
Oryza sativa ssp. japonica	2	17	CH_osa_206	5	12	0.00000200719
Oryza sativa ssp. japonica	4	17	CH_osa_235	4	5	0.00000605616
Oryza sativa ssp. japonica	8	17	CH_osa_65	6	7	0.0000000000375945
Oryza sativa ssp. japonica	8	17	CH_osa_36	10	31	0.00000000000000407075
Oryza sativa ssp. japonica	8	17	CH_osa_61	7	13	0.0000000000189859
Oryza sativa ssp. japonica	10	18	CH_osa_1	43	114	2.19771e-82
Oryza sativa ssp. japonica	8	18	CH_osa_27	10	31	0.00000000000000407075
Oryza sativa ssp. japonica	8	18	CH_osa_91	10	250	0.00001342
Zea mays	1	17	CH_zma_73	4	4	0.0000000622763
Zea mays	4	17	CH_zma_214	3	4	0.000230178
Zea mays	6	17	CH_zma_111	4	7	0.00000217399

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V