PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00034	17	CH_csi_169	3	3	0.000122393
Citrus sinensis	scaffold00060	17	CH_csi_41	5	6	0.00000000232522
Citrus sinensis	scaffold00334	17	CH_csi_105	4	6	0.00000331347
Eucalyptus grandis	scaffold_8	17	CH_egr_441	4	4	0.0000000900789
Malus domestica	12	17	CH_mdo_234	3	4	0.000250355
Oryza sativa ssp. japonica	1	17	CH_osa_413	3	6	0.000665333
Oryza sativa ssp. japonica	12	17	CH_osa_202	5	27	0.00000168642
Vitis vinifera	chr6	17	CH_vvi_413	3	4	0.000638722
Zea mays	9	17	CH_zma_85	5	12	0.000000311107

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V