Functional clusters
Information
- Type
- Mapman term
- Identifier
- 13.1.4.1.4
- Description
- amino acid metabolism.synthesis.branched chain group.common.branched-chain amino acid aminotransferase
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Citrus sinensis | scaffold00023 | 17 | CH_csi_75 | 3 | 3 | 0.000000409066 |
Glycine max | Gm08 | 17 | CH_gma_202 | 3 | 4 | 0.000000693173 |
Manihot esculenta | scaffold03299 | 17 | CH_mes_187 | 2 | 2 | 0.00028656 |
Populus trichocarpa | Chr02 | 17 | CH_ptr_446 | 2 | 2 | 0.000499813 |
Populus trichocarpa | Chr09 | 17 | CH_ptr_445 | 2 | 2 | 0.000499813 |
Prunus persica | scaffold_1 | 17 | CH_ppe_433 | 2 | 2 | 0.000720851 |
Prunus persica | scaffold_8 | 17 | CH_ppe_434 | 2 | 2 | 0.000720851 |
Ricinus communis | 30099 | 17 | CH_rco_108 | 3 | 3 | 0.000000506275 |
Ricinus communis | 30170 | 17 | CH_rco_107 | 3 | 3 | 0.000000506275 |
Vitis vinifera | chr18 | 17 | CH_vvi_365 | 2 | 2 | 0.000228189 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |