PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00014	17	CH_csi_91	3	3	0.00000171808
Glycine max	Gm08	17	CH_gma_334	3	3	0.0000511763
Glycine max	Gm11	17	CH_gma_393	3	4	0.000204556
Glycine max	Gm11	17	CH_gma_27	8	10	1.42171e-18
Glycine max	Gm12	17	CH_gma_23	9	13	1.9242e-20
Glycine max	Gm11	18	CH_gma_43	11	288	0.00000000034862
Manihot esculenta	scaffold03750	17	CH_mes_7	8	8	1.12172e-20
Manihot esculenta	scaffold06327	17	CH_mes_11	7	7	1.46749e-17
Populus trichocarpa	Chr13	17	CH_ptr_340	3	3	0.0000462452
Populus trichocarpa	Chr19	17	CH_ptr_32	10	25	8.55419e-20
Populus trichocarpa	Chr19	18	CH_ptr_30	10	25	8.55419e-20
Prunus persica	scaffold_6	17	CH_ppe_50	6	6	5.42183e-16
Ricinus communis	29643	17	CH_rco_2	11	13	3.14226e-30
Ricinus communis	29643	18	CH_rco_2	11	13	3.14226e-30
Vitis vinifera	chr8	17	CH_vvi_54	6	8	7.41037e-16

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V