PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_9	17	CH_aly_85	3	12	0.000375333
Glycine max	Gm18	17	CH_gma_111	4	4	0.00000000268592
Populus trichocarpa	Chr13	17	CH_ptr_152	4	4	0.00000000398057
Ricinus communis	30185	17	CH_rco_59	5	17	0.0000000010845
Solanum lycopersicum	ch05	17	CH_sly_401	3	3	0.000322526
Solanum lycopersicum	ch08	17	CH_sly_402	3	3	0.000322526
Solanum lycopersicum	ch11	17	CH_sly_136	6	15	0.0000000130199
Vitis vinifera	chrUn	17	CH_vvi_115	5	11	0.000000000505557
Vitis vinifera	chrUn	19	CH_vvi_4	3	10	0.000297179

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V