PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 1.1
Description: PS.lightreaction

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	chloroplast	17	CH_ath_5	30	62	2.36279e-50
Arabidopsis thaliana	chloroplast	18	CH_ath_7	43	112	8.00197e-69
Arabidopsis thaliana	chloroplast	19	CH_ath_4	30	73	7.00204e-49
Arabidopsis thaliana	chloroplast	20	CH_ath_8	35	110	4.45382e-53
Glycine max	Gm12	19	CH_gma_3	4	7	0.000828302
Oryza sativa ssp. japonica	10	17	CH_osa_7	21	51	1.07531e-34
Oryza sativa ssp. japonica	10	17	CH_osa_124	6	10	0.0000000128417
Oryza sativa ssp. japonica	4	17	CH_osa_40	11	38	0.0000000000000203261
Oryza sativa ssp. japonica	6	17	CH_osa_261	5	12	0.0000151495
Oryza sativa ssp. japonica	8	17	CH_osa_344	5	18	0.000161292
Oryza sativa ssp. japonica	10	18	CH_osa_7	21	51	1.07531e-34
Oryza sativa ssp. japonica	4	18	CH_osa_30	11	38	0.0000000000000203261
Oryza sativa ssp. japonica	10	19	CH_osa_1	17	51	4.49348e-26
Oryza sativa ssp. japonica	10	19	CH_osa_7	5	10	0.00000323601
Oryza sativa ssp. japonica	4	19	CH_osa_3	9	37	0.00000000010558
Oryza sativa ssp. japonica	6	19	CH_osa_15	4	7	0.000153707
Oryza sativa ssp. japonica	8	19	CH_osa_14	5	18	0.000107885
Oryza sativa ssp. japonica	10	20	CH_osa_1	17	51	4.49348e-26
Physcomitrella patens	scaffold_27	17	CH_ppa_17	4	4	0.0000226704
Physcomitrella patens	scaffold_27	19	CH_ppa_1	4	4	0.0000165113
Populus trichocarpa	Chr08	17	CH_ptr_313	6	17	0.0000154498
Populus trichocarpa	Chr11	17	CH_ptr_464	4	6	0.000621473
Populus trichocarpa	Chr13	17	CH_ptr_39	16	66	2.06437e-17
Populus trichocarpa	Chr19	17	CH_ptr_463	4	6	0.000621473
Populus trichocarpa	Chr13	18	CH_ptr_35	16	66	2.06437e-17
Populus trichocarpa	Chr11	19	CH_ptr_7	4	6	0.000406131
Populus trichocarpa	Chr13	19	CH_ptr_2	13	66	0.000000000000768821
Populus trichocarpa	Chr19	19	CH_ptr_6	4	6	0.000406131
Populus trichocarpa	Chr13	20	CH_ptr_1	13	66	0.000000000000768821
Solanum lycopersicum	ch01	17	CH_sly_38	13	25	4.2417e-16
Solanum lycopersicum	ch02	17	CH_sly_46	14	40	0.00000000000001486
Solanum lycopersicum	ch12	17	CH_sly_24	12	13	1.31297e-19
Solanum lycopersicum	ch01	18	CH_sly_31	13	25	4.2417e-16
Solanum lycopersicum	ch02	18	CH_sly_38	14	40	0.00000000000001486
Solanum lycopersicum	ch12	18	CH_sly_21	12	13	1.31297e-19
Solanum lycopersicum	ch02	19	CH_sly_13	7	40	0.000435469
Zea mays	2	17	CH_zma_207	4	5	0.000183741
Zea mays	5	17	CH_zma_240	5	14	0.000387031
Zea mays	chloroplast	17	CH_zma_41	12	81	0.0000000011015
Zea mays	chloroplast	18	CH_zma_9	17	135	0.0000000000000214862
Zea mays	2	19	CH_zma_6	4	5	0.000102132
Zea mays	5	19	CH_zma_8	5	14	0.000186331

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V