PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr4.sca001	13	CH_bvu_95	4	4	0.000000000891501
Brassica rapa	A07	13	CH_bra_66	4	4	0.000000000181456
Glycine max	Gm13	13	CH_gma_225	4	4	0.00000000478167
Glycine max	Gm15	13	CH_gma_451	3	3	0.00000923067
Gossypium raimondii	Chr04	13	CH_gra_347	3	4	0.0000116436
Gossypium raimondii	Chr04	13	CH_gra_212	4	7	0.0000000380829
Lotus japonicus	chr3	13	CH_lja_76	4	14	0.000000114781
Medicago truncatula	chr3	13	CH_mtr_741	3	4	0.0000165131
Medicago truncatula	chr8	13	CH_mtr_862	3	6	0.0000825174
Oryza sativa ssp. japonica	3	13	CH_osa_587	3	11	0.0000692498
Prunus persica	scaffold_2	13	CH_ppe_388	3	3	0.00000222927
Theobroma cacao	scaffold_9	13	CH_tca_247	4	8	0.000000158112

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V