PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00095	14	CH_atr_41	12	139	0.0000210176
Arabidopsis lyrata	scaffold_6	14	CH_aly_37	12	70	0.00000000393129
Arabidopsis thaliana	5	13	CH_ath_407	9	79	0.0000771669
Beta vulgaris	Bvchr3.sca003	14	CH_bvu_16	10	49	0.000000204813
Eucalyptus grandis	scaffold_10	14	CH_egr_209	11	45	0.00000000358684
Eucalyptus grandis	scaffold_8	14	CH_egr_244	10	60	0.00000289232
Populus trichocarpa	Chr05	13	CH_ptr_796	4	5	0.000871672
Thellungiella parvula	ch6-6	13	CH_tpa_278	8	60	0.000418127

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V