PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00095	13	CH_atr_286	9	77	0.0000193045
Citrullus lanatus	Chr1	14	CH_cla_19	15	189	0.000000255515
Eucalyptus grandis	scaffold_5	13	CH_egr_1144	4	5	0.000252936
Glycine max	Gm03	13	CH_gma_288	7	13	0.0000000877319
Glycine max	Gm12	14	CH_gma_80	10	107	0.000355509
Malus domestica	7	13	CH_mdo_328	5	11	0.0000574056
Medicago truncatula	chr2	13	CH_mtr_214	9	18	0.00000000000152326
Medicago truncatula	chr2	14	CH_mtr_168	11	185	0.0000472389
Medicago truncatula	chr4	14	CH_mtr_177	10	165	0.000235492
Prunus persica	scaffold_2	14	CH_ppe_112	15	262	0.0000741283
Solanum tuberosum	chr01	13	CH_stu_129	10	13	7.12011e-16
Solanum tuberosum	chr07	13	CH_stu_543	5	6	0.000001886
Solanum tuberosum	chr12	13	CH_stu_176	12	36	0.0000000000000978693
Solanum tuberosum	chr01	14	CH_stu_88	10	13	7.12011e-16
Solanum tuberosum	chr12	14	CH_stu_97	12	36	0.0000000000000978693

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V