PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	13	CH_ath_472	3	9	0.000249498
Capsella rubella	scaffold_7	13	CH_cru_113	4	5	0.000000000233421
Fragaria vesca	LG4	13	CH_fve_249	3	8	0.00000030114
Fragaria vesca	LG4	15	CH_fve_5	3	8	0.00000030114
Glycine max	Gm16	13	CH_gma_586	2	2	0.000111
Medicago truncatula	chr1	13	CH_mtr_538	3	5	0.000000494065
Medicago truncatula	chr6	13	CH_mtr_684	3	10	0.00000592696
Solanum lycopersicum	ch04	13	CH_sly_788	2	2	0.00086061
Theobroma cacao	scaffold_9	13	CH_tca_294	3	10	0.00000083634

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V