PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A03	13	CH_bra_426	3	4	0.000479782
Eucalyptus grandis	scaffold_2	13	CH_egr_571	8	73	0.0000000110533
Eucalyptus grandis	scaffold_2	13	CH_egr_1251	3	4	0.000536733
Eucalyptus grandis	scaffold_5	13	CH_egr_508	5	6	0.00000000182227
Fragaria vesca	LG2	13	CH_fve_66	8	13	0.000000000000123188
Fragaria vesca	LG2	13	CH_fve_661	3	3	0.000720929
Fragaria vesca	LG5	13	CH_fve_60	8	12	0.0000000000000474901
Fragaria vesca	LG2	14	CH_fve_44	14	299	0.00000000475359
Gossypium raimondii	Chr05	13	CH_gra_581	3	4	0.000782779
Medicago truncatula	chr2	13	CH_mtr_1143	3	3	0.000516919
Medicago truncatula	chr4	13	CH_mtr_194	10	49	0.000000000000423776
Medicago truncatula	chr4	13	CH_mtr_290	7	18	0.000000000228958
Medicago truncatula	chr6	13	CH_mtr_164	10	40	0.0000000000000396545
Medicago truncatula	chr4	14	CH_mtr_78	18	273	2.24315e-17
Medicago truncatula	chr6	14	CH_mtr_107	10	40	0.0000000000000396545
Oryza sativa ssp. japonica	12	13	CH_osa_531	3	3	0.0000330322
Oryza sativa ssp. japonica	4	13	CH_osa_295	5	15	0.000000062112
Physcomitrella patens	scaffold_180	13	CH_ppa_160	3	4	0.00085134
Solanum tuberosum	chr06	13	CH_stu_466	7	54	0.000000245824
Solanum tuberosum	chr08	13	CH_stu_1087	3	4	0.000771275
Thellungiella parvula	ch7-5	13	CH_tpa_276	3	4	0.000345924

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V