PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr9.sca026	13	CH_bvu_167	4	6	0.000000358268
Citrullus lanatus	Chr11	13	CH_cla_477	2	2	0.000851136
Eucalyptus grandis	scaffold_2	13	CH_egr_1183	2	2	0.000350559
Malus domestica	13	13	CH_mdo_242	3	4	0.00000581534
Medicago truncatula	chr8	13	CH_mtr_224	6	10	0.0000000000051835
Medicago truncatula	chr8	13	CH_mtr_2	22	38	1.11509e-54
Medicago truncatula	chr8	14	CH_mtr_3	22	38	1.11509e-54
Oryza sativa ssp. japonica	2	13	CH_osa_269	4	10	0.0000000204469
Oryza sativa ssp. japonica	4	13	CH_osa_524	3	8	0.0000305645
Solanum lycopersicum	ch07	13	CH_sly_11	14	34	5.0571e-31
Solanum lycopersicum	ch11	13	CH_sly_447	3	3	0.0000244915
Solanum lycopersicum	ch07	14	CH_sly_10	21	285	2.83484e-32
Solanum tuberosum	chr07	13	CH_stu_737	3	3	0.000051828
Solanum tuberosum	chr07	15	CH_stu_6	3	3	0.00000646635
Zea mays	4	13	CH_zma_264	3	3	0.0000154035

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V