PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_32	13	CH_cpa_153	3	3	0.0000064329
Carica papaya	supercontig_8	13	CH_cpa_183	3	4	0.0000257191
Citrullus lanatus	Chr2	13	CH_cla_8	11	13	1.51553e-28
Citrullus lanatus	Chr2	14	CH_cla_8	11	13	1.51553e-28
Cucumis melo	CM3.5_scaffold00003	13	CH_cme_20	9	12	7.50406e-22
Cucumis melo	CM3.5_scaffold00022	13	CH_cme_10	12	13	8.37219e-33
Cucumis melo	CM3.5_scaffold00022	14	CH_cme_10	12	13	8.37219e-33
Glycine max	Gm07	13	CH_gma_155	5	5	0.000000000044458
Manihot esculenta	scaffold06407	13	CH_mes_30	5	5	0.00000000000182826
Solanum lycopersicum	ch01	13	CH_sly_54	7	7	3.32732e-18
Solanum tuberosum	chr01	13	CH_stu_816	3	4	0.0000789097
Solanum tuberosum	chr08	13	CH_stu_148	6	6	0.00000000000000799259
Theobroma cacao	scaffold_5	13	CH_tca_35	7	7	6.13032e-19

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V