PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00010	13	CH_csi_53	5	6	0.0000000000353542
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_203	3	3	0.00000717209
Eucalyptus grandis	scaffold_6	13	CH_egr_506	6	9	0.00000000172063
Medicago truncatula	chr3	13	CH_mtr_710	4	10	0.00000824518
Oryza sativa ssp. japonica	11	13	CH_osa_451	4	7	0.00000831539
Oryza sativa ssp. japonica	12	13	CH_osa_429	4	6	0.00000356777
Populus trichocarpa	Chr10	13	CH_ptr_34	16	49	6.36655e-28
Populus trichocarpa	Chr10	14	CH_ptr_35	16	49	6.36655e-28
Theobroma cacao	scaffold_5	13	CH_tca_200	4	4	0.000000019462

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V