PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A07	13	CH_bra_194	4	4	0.0000023603
Eucalyptus grandis	scaffold_11	13	CH_egr_679	5	9	0.000000202057
Eucalyptus grandis	scaffold_5	13	CH_egr_463	6	9	0.000000000279901
Eucalyptus grandis	scaffold_5	14	CH_egr_246	10	245	0.00000629464
Glycine max	Gm15	13	CH_gma_8	18	18	8.69602e-42
Glycine max	Gm15	14	CH_gma_9	18	18	8.69602e-42
Malus domestica	6	13	CH_mdo_490	5	33	0.000378978
Medicago truncatula	chr3	13	CH_mtr_1170	3	4	0.000577369
Medicago truncatula	chr4	13	CH_mtr_556	5	15	0.000000687608
Prunus persica	scaffold_5	13	CH_ppe_104	7	7	0.0000000000000147019
Solanum lycopersicum	ch12	13	CH_sly_538	4	8	0.0000655186
Solanum tuberosum	chr06	13	CH_stu_325	5	5	0.00000000189443
Thellungiella parvula	ch1-1	13	CH_tpa_307	3	3	0.000541452
Vitis vinifera	chr10	13	CH_vvi_390	5	15	0.000007937

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V